Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS1Q99742 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS1Q99742 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.69■□□□□ 0.74
NPAS1Q99742 OXCT2P1-201ENST00000447263 1535 ntBASIC19.69■□□□□ 0.74
NPAS1Q99742 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NPAS1Q99742 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.69■□□□□ 0.74
NPAS1Q99742 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.68■□□□□ 0.74
NPAS1Q99742 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS1Q99742 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS1Q99742 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS1Q99742 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.68■□□□□ 0.74
NPAS1Q99742 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS1Q99742 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.68■□□□□ 0.74
NPAS1Q99742 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS1Q99742 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
NPAS1Q99742 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS1Q99742 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS1Q99742 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS1Q99742 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS1Q99742 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NPAS1Q99742 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.67■□□□□ 0.74
NPAS1Q99742 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
NPAS1Q99742 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.67■□□□□ 0.74
NPAS1Q99742 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPAS1Q99742 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.67■□□□□ 0.74
NPAS1Q99742 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.67■□□□□ 0.74
NPAS1Q99742 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NPAS1Q99742 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NPAS1Q99742 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.67■□□□□ 0.74
NPAS1Q99742 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.67■□□□□ 0.74
NPAS1Q99742 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.67■□□□□ 0.74
NPAS1Q99742 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.67■□□□□ 0.74
NPAS1Q99742 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
NPAS1Q99742 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
NPAS1Q99742 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
NPAS1Q99742 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.66■□□□□ 0.74
NPAS1Q99742 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPAS1Q99742 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPAS1Q99742 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
NPAS1Q99742 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
NPAS1Q99742 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
NPAS1Q99742 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPAS1Q99742 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.66■□□□□ 0.74
NPAS1Q99742 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.66■□□□□ 0.74
NPAS1Q99742 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.66■□□□□ 0.74
NPAS1Q99742 AC079089.2-201ENST00000531211 1277 ntBASIC19.66■□□□□ 0.74
NPAS1Q99742 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
NPAS1Q99742 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPAS1Q99742 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.66■□□□□ 0.74
NPAS1Q99742 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPAS1Q99742 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPAS1Q99742 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPAS1Q99742 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPAS1Q99742 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPAS1Q99742 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPAS1Q99742 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.65■□□□□ 0.74
NPAS1Q99742 AC087239.1-201ENST00000622671 572 ntBASIC19.65■□□□□ 0.74
NPAS1Q99742 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.65■□□□□ 0.74
NPAS1Q99742 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
NPAS1Q99742 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPAS1Q99742 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.65■□□□□ 0.74
NPAS1Q99742 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NPAS1Q99742 AL117328.2-201ENST00000624617 1940 ntBASIC19.64■□□□□ 0.74
NPAS1Q99742 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.64■□□□□ 0.74
NPAS1Q99742 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NPAS1Q99742 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
NPAS1Q99742 MIR572-201ENST00000384983 95 ntBASIC19.64■□□□□ 0.73
NPAS1Q99742 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.64■□□□□ 0.73
NPAS1Q99742 SMUG1P1-201ENST00000590640 811 ntBASIC19.64■□□□□ 0.73
NPAS1Q99742 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.64■□□□□ 0.73
NPAS1Q99742 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPAS1Q99742 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
NPAS1Q99742 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPAS1Q99742 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPAS1Q99742 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPAS1Q99742 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
NPAS1Q99742 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPAS1Q99742 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.64■□□□□ 0.73
NPAS1Q99742 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS1Q99742 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS1Q99742 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
NPAS1Q99742 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.63■□□□□ 0.73
NPAS1Q99742 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS1Q99742 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS1Q99742 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
NPAS1Q99742 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS1Q99742 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS1Q99742 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.63■□□□□ 0.73
NPAS1Q99742 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS1Q99742 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.63■□□□□ 0.73
NPAS1Q99742 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS1Q99742 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS1Q99742 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS1Q99742 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS1Q99742 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS1Q99742 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS1Q99742 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS1Q99742 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS1Q99742 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS1Q99742 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms