Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS13AQ96RL7 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.66■■□□□ 1.06
VPS13AQ96RL7 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS13AQ96RL7 AC007322.4-201ENST00000509611 723 ntBASIC21.66■■□□□ 1.06
VPS13AQ96RL7 FP325331.1-202ENST00000623531 1380 ntBASIC21.65■■□□□ 1.06
VPS13AQ96RL7 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS13AQ96RL7 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS13AQ96RL7 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.65■■□□□ 1.06
VPS13AQ96RL7 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.65■■□□□ 1.06
VPS13AQ96RL7 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.65■■□□□ 1.06
VPS13AQ96RL7 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS13AQ96RL7 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.65■■□□□ 1.06
VPS13AQ96RL7 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS13AQ96RL7 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
VPS13AQ96RL7 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.06
VPS13AQ96RL7 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
VPS13AQ96RL7 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS13AQ96RL7 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS13AQ96RL7 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS13AQ96RL7 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VPS13AQ96RL7 AC013268.1-206ENST00000638368 961 ntBASIC21.64■■□□□ 1.05
VPS13AQ96RL7 AC112229.1-201ENST00000639295 961 ntBASIC21.64■■□□□ 1.05
VPS13AQ96RL7 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VPS13AQ96RL7 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS13AQ96RL7 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.64■■□□□ 1.05
VPS13AQ96RL7 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
VPS13AQ96RL7 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS13AQ96RL7 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VPS13AQ96RL7 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 UNC93B5-201ENST00000530315 699 ntBASIC21.63■■□□□ 1.05
VPS13AQ96RL7 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 AC026366.1-201ENST00000488803 879 ntBASIC21.63■■□□□ 1.05
VPS13AQ96RL7 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS13AQ96RL7 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.62■■□□□ 1.05
VPS13AQ96RL7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
VPS13AQ96RL7 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS13AQ96RL7 MIPEPP3-201ENST00000412105 444 ntBASIC21.61■■□□□ 1.05
VPS13AQ96RL7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS13AQ96RL7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
VPS13AQ96RL7 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS13AQ96RL7 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS13AQ96RL7 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.61■■□□□ 1.05
VPS13AQ96RL7 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS13AQ96RL7 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.61■■□□□ 1.05
VPS13AQ96RL7 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.6■■□□□ 1.05
VPS13AQ96RL7 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS13AQ96RL7 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VPS13AQ96RL7 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS13AQ96RL7 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
VPS13AQ96RL7 KRT18P21-201ENST00000515767 1272 ntBASIC21.59■■□□□ 1.05
VPS13AQ96RL7 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS13AQ96RL7 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS13AQ96RL7 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms