Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 ESRRAP2-201ENST00000418437 1549 ntBASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD1Q96NR3 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 AC027612.3-201ENST00000413684 1047 ntBASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 AC026271.2-201ENST00000428091 497 ntBASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD1Q96NR3 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTCHD1Q96NR3 AC137767.1-201ENST00000602918 1920 ntBASIC20.33■□□□□ 0.85
PTCHD1Q96NR3 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTCHD1Q96NR3 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTCHD1Q96NR3 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PTCHD1Q96NR3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTCHD1Q96NR3 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTCHD1Q96NR3 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PTCHD1Q96NR3 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 AC097381.1-201ENST00000429019 1296 ntBASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 YBX1P1-201ENST00000445822 960 ntBASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 MIR6821-201ENST00000617625 74 ntBASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 OR7E47P-201ENST00000546390 1422 ntBASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD1Q96NR3 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 BX005040.4-201ENST00000637145 1518 ntBASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 AL117328.2-201ENST00000624617 1940 ntBASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD1Q96NR3 LINC00526-201ENST00000581067 1875 ntBASIC20.3■□□□□ 0.84
PTCHD1Q96NR3 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.3■□□□□ 0.84
PTCHD1Q96NR3 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
PTCHD1Q96NR3 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTCHD1Q96NR3 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
PTCHD1Q96NR3 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTCHD1Q96NR3 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTCHD1Q96NR3 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTCHD1Q96NR3 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTCHD1Q96NR3 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
PTCHD1Q96NR3 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.3■□□□□ 0.84
PTCHD1Q96NR3 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 AC123595.1-201ENST00000440769 1046 ntBASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms