Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
UBE3DQ7Z6J8 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 TSPY26P-201ENST00000476365 1326 ntBASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 C11orf96-202ENST00000528572 1834 ntBASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 AC142381.2-201ENST00000566120 298 ntBASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
UBE3DQ7Z6J8 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 SMUG1P1-201ENST00000590640 811 ntBASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBE3DQ7Z6J8 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 LINC00565-201ENST00000562710 2331 ntBASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
UBE3DQ7Z6J8 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3DQ7Z6J8 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.53■□□□□ 0.88
UBE3DQ7Z6J8 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3DQ7Z6J8 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3DQ7Z6J8 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3DQ7Z6J8 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.53■□□□□ 0.88
UBE3DQ7Z6J8 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.53■□□□□ 0.88
UBE3DQ7Z6J8 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.53■□□□□ 0.88
UBE3DQ7Z6J8 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
UBE3DQ7Z6J8 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3DQ7Z6J8 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3DQ7Z6J8 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.52■□□□□ 0.88
UBE3DQ7Z6J8 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.52■□□□□ 0.88
UBE3DQ7Z6J8 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3DQ7Z6J8 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3DQ7Z6J8 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3DQ7Z6J8 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.52■□□□□ 0.88
UBE3DQ7Z6J8 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3DQ7Z6J8 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
UBE3DQ7Z6J8 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3DQ7Z6J8 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3DQ7Z6J8 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.52■□□□□ 0.87
UBE3DQ7Z6J8 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3DQ7Z6J8 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 FAM99A-202ENST00000538190 1989 ntBASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3DQ7Z6J8 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms