Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL158047.1-201ENST00000445918 881 ntBASIC23.25■■□□□ 1.31
CHD9Q3L8U1 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC23.25■■□□□ 1.31
CHD9Q3L8U1 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CHD9Q3L8U1 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.25■■□□□ 1.31
CHD9Q3L8U1 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CHD9Q3L8U1 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC23.25■■□□□ 1.31
CHD9Q3L8U1 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.24■■□□□ 1.31
CHD9Q3L8U1 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC23.23■■□□□ 1.31
CHD9Q3L8U1 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC23.23■■□□□ 1.31
CHD9Q3L8U1 UNC93B4-201ENST00000505679 747 ntBASIC23.23■■□□□ 1.31
CHD9Q3L8U1 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC23.23■■□□□ 1.31
CHD9Q3L8U1 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CHD9Q3L8U1 RPS2P4-201ENST00000476944 856 ntBASIC23.23■■□□□ 1.31
CHD9Q3L8U1 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.23■■□□□ 1.31
CHD9Q3L8U1 AC013268.1-206ENST00000638368 961 ntBASIC23.23■■□□□ 1.31
CHD9Q3L8U1 AC112229.1-201ENST00000639295 961 ntBASIC23.23■■□□□ 1.31
CHD9Q3L8U1 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.23■■□□□ 1.31
CHD9Q3L8U1 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CHD9Q3L8U1 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
CHD9Q3L8U1 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC23.23■■□□□ 1.31
CHD9Q3L8U1 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC23.22■■□□□ 1.31
CHD9Q3L8U1 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
CHD9Q3L8U1 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.21■■□□□ 1.31
CHD9Q3L8U1 MMD2-204ENST00000612910 778 ntTSL 5 BASIC23.21■■□□□ 1.31
CHD9Q3L8U1 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CHD9Q3L8U1 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC23.21■■□□□ 1.31
CHD9Q3L8U1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.21■■□□□ 1.31
CHD9Q3L8U1 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.21■■□□□ 1.31
CHD9Q3L8U1 MIPEPP3-201ENST00000412105 444 ntBASIC23.21■■□□□ 1.31
CHD9Q3L8U1 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CHD9Q3L8U1 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CHD9Q3L8U1 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CHD9Q3L8U1 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.31
CHD9Q3L8U1 LINC00543-201ENST00000567234 1845 ntBASIC23.2■■□□□ 1.3
CHD9Q3L8U1 ESRRAP1-201ENST00000400596 1257 ntBASIC23.2■■□□□ 1.3
CHD9Q3L8U1 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.2■■□□□ 1.3
CHD9Q3L8U1 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CHD9Q3L8U1 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CHD9Q3L8U1 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CHD9Q3L8U1 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.2■■□□□ 1.3
CHD9Q3L8U1 AC068587.7-201ENST00000641602 218 ntBASIC23.2■■□□□ 1.3
CHD9Q3L8U1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CHD9Q3L8U1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CHD9Q3L8U1 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 INO80E-214ENST00000620599 515 ntTSL 2 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 AC009237.3-201ENST00000393279 1427 ntBASIC23.19■■□□□ 1.3
CHD9Q3L8U1 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.19■■□□□ 1.3
CHD9Q3L8U1 AC055733.4-201ENST00000638462 1354 ntBASIC23.18■■□□□ 1.3
CHD9Q3L8U1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
CHD9Q3L8U1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.18■■□□□ 1.3
CHD9Q3L8U1 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
CHD9Q3L8U1 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CHD9Q3L8U1 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CHD9Q3L8U1 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC23.18■■□□□ 1.3
CHD9Q3L8U1 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.18■■□□□ 1.3
CHD9Q3L8U1 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.18■■□□□ 1.3
CHD9Q3L8U1 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.17■■□□□ 1.3
CHD9Q3L8U1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
CHD9Q3L8U1 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC23.17■■□□□ 1.3
CHD9Q3L8U1 AC093787.1-201ENST00000450396 207 ntBASIC23.17■■□□□ 1.3
CHD9Q3L8U1 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms