Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HSPG2P98160 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HSPG2P98160 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC13.63□□□□□ -0.23
HSPG2P98160 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC13.63□□□□□ -0.23
HSPG2P98160 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
HSPG2P98160 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
HSPG2P98160 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HSPG2P98160 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC13.63□□□□□ -0.23
HSPG2P98160 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HSPG2P98160 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC13.63□□□□□ -0.23
HSPG2P98160 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HSPG2P98160 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HSPG2P98160 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HSPG2P98160 ABHD17AP6-201ENST00000458502 1044 ntBASIC13.63□□□□□ -0.23
HSPG2P98160 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HSPG2P98160 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HSPG2P98160 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HSPG2P98160 MIR718-201ENST00000390190 70 ntBASIC13.62□□□□□ -0.23
HSPG2P98160 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HSPG2P98160 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC13.62□□□□□ -0.23
HSPG2P98160 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HSPG2P98160 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC13.62□□□□□ -0.23
HSPG2P98160 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC13.62□□□□□ -0.23
HSPG2P98160 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
HSPG2P98160 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HSPG2P98160 PXK-203ENST00000383715 1756 ntTSL 5 BASIC13.62□□□□□ -0.23
HSPG2P98160 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HSPG2P98160 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HSPG2P98160 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC13.62□□□□□ -0.23
HSPG2P98160 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC13.62□□□□□ -0.23
HSPG2P98160 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC13.62□□□□□ -0.23
HSPG2P98160 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC13.62□□□□□ -0.23
HSPG2P98160 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HSPG2P98160 AC009237.3-201ENST00000393279 1427 ntBASIC13.62□□□□□ -0.23
HSPG2P98160 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC13.62□□□□□ -0.23
HSPG2P98160 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HSPG2P98160 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HSPG2P98160 PPOX-219ENST00000544598 813 ntTSL 2 BASIC13.62□□□□□ -0.23
HSPG2P98160 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HSPG2P98160 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HSPG2P98160 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HSPG2P98160 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HSPG2P98160 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HSPG2P98160 NAA20-201ENST00000310450 920 ntTSL 2 BASIC13.61□□□□□ -0.23
HSPG2P98160 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
HSPG2P98160 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC13.61□□□□□ -0.23
HSPG2P98160 EI24-213ENST00000618552 1747 ntTSL 5 BASIC13.61□□□□□ -0.23
HSPG2P98160 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HSPG2P98160 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC13.61□□□□□ -0.23
HSPG2P98160 ISCU-212ENST00000547005 795 ntTSL 3 BASIC13.61□□□□□ -0.23
HSPG2P98160 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HSPG2P98160 FP325331.1-202ENST00000623531 1380 ntBASIC13.61□□□□□ -0.23
HSPG2P98160 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HSPG2P98160 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HSPG2P98160 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
HSPG2P98160 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
HSPG2P98160 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HSPG2P98160 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
HSPG2P98160 AL359736.2-201ENST00000621992 437 ntBASIC13.61□□□□□ -0.23
HSPG2P98160 AC008694.1-202ENST00000636953 945 ntBASIC13.61□□□□□ -0.23
HSPG2P98160 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HSPG2P98160 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC13.61□□□□□ -0.23
HSPG2P98160 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HSPG2P98160 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC13.6□□□□□ -0.23
HSPG2P98160 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC13.6□□□□□ -0.23
HSPG2P98160 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
HSPG2P98160 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HSPG2P98160 AL512625.2-201ENST00000417533 625 ntBASIC13.6□□□□□ -0.23
HSPG2P98160 REXO2-216ENST00000544196 452 ntTSL 3 BASIC13.6□□□□□ -0.23
HSPG2P98160 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC13.6□□□□□ -0.23
HSPG2P98160 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HSPG2P98160 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HSPG2P98160 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC13.6□□□□□ -0.23
HSPG2P98160 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HSPG2P98160 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HSPG2P98160 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC13.6□□□□□ -0.23
HSPG2P98160 AC055733.4-201ENST00000638462 1354 ntBASIC13.6□□□□□ -0.23
HSPG2P98160 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HSPG2P98160 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HSPG2P98160 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC13.6□□□□□ -0.23
HSPG2P98160 AC010141.3-201ENST00000456659 717 ntBASIC13.6□□□□□ -0.23
HSPG2P98160 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HSPG2P98160 AP003097.1-201ENST00000530657 1135 ntBASIC13.6□□□□□ -0.23
HSPG2P98160 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HSPG2P98160 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC13.6□□□□□ -0.23
HSPG2P98160 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC13.6□□□□□ -0.23
HSPG2P98160 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HSPG2P98160 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HSPG2P98160 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC13.59□□□□□ -0.23
HSPG2P98160 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC13.59□□□□□ -0.23
HSPG2P98160 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HSPG2P98160 BX276092.2-201ENST00000417668 665 ntBASIC13.59□□□□□ -0.23
HSPG2P98160 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HSPG2P98160 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC13.59□□□□□ -0.23
HSPG2P98160 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HSPG2P98160 AC008403.3-201ENST00000598924 454 ntBASIC13.59□□□□□ -0.23
HSPG2P98160 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
HSPG2P98160 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
HSPG2P98160 AC097493.4-201ENST00000641197 219 ntBASIC13.59□□□□□ -0.23
HSPG2P98160 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms