Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeast

Predictions only

Length 423 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	P34223	MAP1	YLR244C	1164 nt		3.94	□□□□□ -1.78
SHP1	P34223	YML094C-A	YML094C-A	402 nt		3.94	□□□□□ -1.78
SHP1	P34223	RPL19B	YBL027W	570 nt		3.94	□□□□□ -1.78
SHP1	P34223	PNO1	YOR145C	825 nt		3.94	□□□□□ -1.78
SHP1	P34223	YBR053C	YBR053C	1077 nt		3.94	□□□□□ -1.78
SHP1	P34223	HUT1	YPL244C	1020 nt		3.94	□□□□□ -1.78
SHP1	P34223	snR37	snR37	386 nt		3.94	□□□□□ -1.78
SHP1	P34223	DER1	YBR201W	636 nt		3.94	□□□□□ -1.78
SHP1	P34223	VID28	YIL017C	2766 nt		3.94	□□□□□ -1.78
SHP1	P34223	SYF1	YDR416W	2580 nt		3.94	□□□□□ -1.78
SHP1	P34223	DIP2	YLR129W	2832 nt		3.94	□□□□□ -1.78
SHP1	P34223	PUT2	YHR037W	1728 nt		3.93	□□□□□ -1.78
SHP1	P34223	SNF2	YOR290C	5112 nt		3.93	□□□□□ -1.78
SHP1	P34223	YCR007C	YCR007C	720 nt		3.93	□□□□□ -1.78
SHP1	P34223	ATP5	YDR298C	639 nt		3.93	□□□□□ -1.78
SHP1	P34223	YER076C	YER076C	909 nt		3.93	□□□□□ -1.78
SHP1	P34223	YGR051C	YGR051C	324 nt		3.93	□□□□□ -1.78
SHP1	P34223	RIF2	YLR453C	1188 nt		3.93	□□□□□ -1.78
SHP1	P34223	TAF3	YPL011C	1062 nt		3.93	□□□□□ -1.78
SHP1	P34223	ECM8	YBR076W	1065 nt		3.93	□□□□□ -1.78
SHP1	P34223	RRP7	YCL031C	894 nt		3.93	□□□□□ -1.78
SHP1	P34223	PMT6	YGR199W	2280 nt		3.93	□□□□□ -1.78
SHP1	P34223	SMP3	YOR149C	1551 nt		3.93	□□□□□ -1.78
SHP1	P34223	YDR034C-C	YDR034C-C	1317 nt		3.93	□□□□□ -1.78
SHP1	P34223	YLR410W-A	YLR410W-A	1317 nt		3.93	□□□□□ -1.78
SHP1	P34223	MEK1	YOR351C	1494 nt		3.92	□□□□□ -1.78
SHP1	P34223	HMG1	YML075C	3165 nt		3.92	□□□□□ -1.78
SHP1	P34223	RAD1	YPL022W	3303 nt		3.92	□□□□□ -1.78
SHP1	P34223	CLG1	YGL215W	1359 nt		3.92	□□□□□ -1.78
SHP1	P34223	RSF2	YJR127C	4143 nt		3.92	□□□□□ -1.78
SHP1	P34223	YCF1	YDR135C	4548 nt		3.92	□□□□□ -1.78
SHP1	P34223	RPS11A	YDR025W	471 nt		3.92	□□□□□ -1.78
SHP1	P34223	TOS8	YGL096W	831 nt		3.92	□□□□□ -1.78
SHP1	P34223	COS8	YHL048W	1146 nt		3.92	□□□□□ -1.78
SHP1	P34223	COX3	Q0275	810 nt		3.92	□□□□□ -1.78
SHP1	P34223	PML39	YML107C	1005 nt		3.92	□□□□□ -1.78
SHP1	P34223	MSD1	YPL104W	1977 nt		3.92	□□□□□ -1.78
SHP1	P34223	RRN6	YBL014C	2685 nt		3.92	□□□□□ -1.78
SHP1	P34223	MCP2	YLR253W	1710 nt		3.92	□□□□□ -1.78
SHP1	P34223	PIM1	YBL022C	3402 nt		3.92	□□□□□ -1.78
SHP1	P34223	SPS2	YDR522C	1509 nt		3.91	□□□□□ -1.78
SHP1	P34223	HAP4	YKL109W	1665 nt		3.91	□□□□□ -1.78
SHP1	P34223	FMC1	YIL098C	468 nt		3.91	□□□□□ -1.78
SHP1	P34223	GSP1	YLR293C	660 nt		3.91	□□□□□ -1.78
SHP1	P34223	YNL226W	YNL226W	411 nt		3.91	□□□□□ -1.78
SHP1	P34223	TAF12	YDR145W	1620 nt		3.91	□□□□□ -1.78
SHP1	P34223	GLO3	YER122C	1482 nt		3.91	□□□□□ -1.78
SHP1	P34223	VPS30	YPL120W	1674 nt		3.9	□□□□□ -1.78
SHP1	P34223	HIM1	YDR317W	1245 nt		3.9	□□□□□ -1.79
SHP1	P34223	YFR032C-B	YFR032C-B	264 nt		3.9	□□□□□ -1.79
SHP1	P34223	GTF1	YGR102C	552 nt		3.9	□□□□□ -1.79
SHP1	P34223	TMA19	YKL056C	504 nt		3.9	□□□□□ -1.79
SHP1	P34223	YKL162C	YKL162C	1209 nt		3.9	□□□□□ -1.79
SHP1	P34223	YLR365W	YLR365W	333 nt		3.9	□□□□□ -1.79
SHP1	P34223	ECM16	YMR128W	3804 nt		3.9	□□□□□ -1.79
SHP1	P34223	IBD2	YNL164C	1056 nt		3.9	□□□□□ -1.79
SHP1	P34223	BTS1	YPL069C	1008 nt		3.9	□□□□□ -1.79
SHP1	P34223	YPR074W-A	YPR074W-A	171 nt		3.9	□□□□□ -1.79
SHP1	P34223	OM14	YBR230C	405 nt		3.9	□□□□□ -1.79
SHP1	P34223	YBR292C	YBR292C	372 nt		3.9	□□□□□ -1.79
SHP1	P34223	SHQ1	YIL104C	1524 nt		3.9	□□□□□ -1.79
SHP1	P34223	YFL040W	YFL040W	1623 nt		3.89	□□□□□ -1.79
SHP1	P34223	SWH1	YAR042W	3567 nt		3.89	□□□□□ -1.79
SHP1	P34223	YGL177W	YGL177W	348 nt		3.89	□□□□□ -1.79
SHP1	P34223	YBL062W	YBL062W	381 nt		3.89	□□□□□ -1.79
SHP1	P34223	TMC1	YOR052C	453 nt		3.89	□□□□□ -1.79
SHP1	P34223	YBR013C	YBR013C	390 nt		3.89	□□□□□ -1.79
SHP1	P34223	PLP2	YOR281C	861 nt		3.89	□□□□□ -1.79
SHP1	P34223	LCB5	YLR260W	2064 nt		3.89	□□□□□ -1.79
SHP1	P34223	ATG2	YNL242W	4779 nt		3.89	□□□□□ -1.79
SHP1	P34223	YPK9	YOR291W	4419 nt		3.88	□□□□□ -1.79
SHP1	P34223	VAC17	YCL063W	1272 nt		3.88	□□□□□ -1.79
SHP1	P34223	YAL064W	YAL064W	285 nt		3.88	□□□□□ -1.79
SHP1	P34223	YML047W-A	YML047W-A	366 nt		3.88	□□□□□ -1.79
SHP1	P34223	MOH1	YBL049W	417 nt		3.88	□□□□□ -1.79
SHP1	P34223	APA1	YCL050C	966 nt		3.88	□□□□□ -1.79
SHP1	P34223	MIS1	YBR084W	2928 nt		3.88	□□□□□ -1.79
SHP1	P34223	DHR2	YKL078W	2208 nt		3.88	□□□□□ -1.79
SHP1	P34223	GAL11	YOL051W	3246 nt		3.88	□□□□□ -1.79
SHP1	P34223	UBX5	YDR330W	1503 nt		3.87	□□□□□ -1.79
SHP1	P34223	OPI6	YDL096C	327 nt		3.87	□□□□□ -1.79
SHP1	P34223	PAU10	YDR542W	363 nt		3.87	□□□□□ -1.79
SHP1	P34223	PAU11	YGL261C	363 nt		3.87	□□□□□ -1.79
SHP1	P34223	PAU13	YHL046C	363 nt		3.87	□□□□□ -1.79
SHP1	P34223	CUP1-1	YHR053C	186 nt		3.87	□□□□□ -1.79
SHP1	P34223	CUP1-2	YHR055C	186 nt		3.87	□□□□□ -1.79
SHP1	P34223	YIL014C-A	YIL014C-A	315 nt		3.87	□□□□□ -1.79
SHP1	P34223	YIR021W-A	YIR021W-A	213 nt		3.87	□□□□□ -1.79
SHP1	P34223	POL32	YJR043C	1053 nt		3.87	□□□□□ -1.79
SHP1	P34223	IRC25	YLR021W	540 nt		3.87	□□□□□ -1.79
SHP1	P34223	PAU4	YLR461W	363 nt		3.87	□□□□□ -1.79
SHP1	P34223	FYV6	YNL133C	522 nt		3.87	□□□□□ -1.79
SHP1	P34223	ATG5	YPL149W	885 nt		3.87	□□□□□ -1.79
SHP1	P34223	YAR1	YPL239W	603 nt		3.87	□□□□□ -1.79
SHP1	P34223	URC2	YDR520C	2319 nt		3.87	□□□□□ -1.79
SHP1	P34223	MAL12	YGR292W	1755 nt		3.86	□□□□□ -1.79
SHP1	P34223	MAL32	YBR299W	1755 nt		3.86	□□□□□ -1.79
SHP1	P34223	SAT4	YCR008W	1812 nt		3.86	□□□□□ -1.79
SHP1	P34223	RTS1	YOR014W	2274 nt		3.86	□□□□□ -1.79
SHP1	P34223	RNR1	YER070W	2667 nt		3.86	□□□□□ -1.79

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