Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN4P29074 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN4P29074 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN4P29074 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN4P29074 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN4P29074 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN4P29074 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN4P29074 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN4P29074 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.58■■□□□ 1.05
PTPN4P29074 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.58■■□□□ 1.05
PTPN4P29074 DUX4L19-201ENST00000557448 1267 ntBASIC21.58■■□□□ 1.05
PTPN4P29074 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN4P29074 AC005229.4-201ENST00000610085 2198 ntBASIC21.58■■□□□ 1.04
PTPN4P29074 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
PTPN4P29074 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
PTPN4P29074 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN4P29074 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN4P29074 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN4P29074 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.57■■□□□ 1.04
PTPN4P29074 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN4P29074 EDA-201ENST00000338901 1233 ntBASIC21.57■■□□□ 1.04
PTPN4P29074 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN4P29074 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN4P29074 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.57■■□□□ 1.04
PTPN4P29074 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.57■■□□□ 1.04
PTPN4P29074 AC024257.2-201ENST00000549699 147 ntBASIC21.57■■□□□ 1.04
PTPN4P29074 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN4P29074 AL022069.1-201ENST00000568025 1636 ntBASIC21.57■■□□□ 1.04
PTPN4P29074 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN4P29074 AC092667.1-201ENST00000434301 2586 ntBASIC21.57■■□□□ 1.04
PTPN4P29074 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN4P29074 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
PTPN4P29074 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
PTPN4P29074 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN4P29074 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN4P29074 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN4P29074 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN4P29074 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN4P29074 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN4P29074 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.56■■□□□ 1.04
PTPN4P29074 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN4P29074 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.56■■□□□ 1.04
PTPN4P29074 SUDS3P1-201ENST00000505831 966 ntBASIC21.56■■□□□ 1.04
PTPN4P29074 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN4P29074 AL031432.3-201ENST00000607698 485 ntBASIC21.56■■□□□ 1.04
PTPN4P29074 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN4P29074 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN4P29074 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
PTPN4P29074 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN4P29074 ALDH1A3-203ENST00000557963 1670 ntBASIC21.56■■□□□ 1.04
PTPN4P29074 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN4P29074 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN4P29074 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN4P29074 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.55■■□□□ 1.04
PTPN4P29074 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN4P29074 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.55■■□□□ 1.04
PTPN4P29074 AL355001.2-201ENST00000620617 1191 ntBASIC21.55■■□□□ 1.04
PTPN4P29074 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN4P29074 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
PTPN4P29074 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN4P29074 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
PTPN4P29074 AC010542.4-201ENST00000563151 1910 ntBASIC21.55■■□□□ 1.04
PTPN4P29074 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.54■■□□□ 1.04
PTPN4P29074 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN4P29074 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.54■■□□□ 1.04
PTPN4P29074 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN4P29074 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN4P29074 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN4P29074 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
PTPN4P29074 AC092171.4-201ENST00000609130 632 ntBASIC21.54■■□□□ 1.04
PTPN4P29074 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.54■■□□□ 1.04
PTPN4P29074 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.54■■□□□ 1.04
PTPN4P29074 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
PTPN4P29074 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN4P29074 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN4P29074 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.54■■□□□ 1.04
PTPN4P29074 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN4P29074 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.54■■□□□ 1.04
PTPN4P29074 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN4P29074 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN4P29074 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN4P29074 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.53■■□□□ 1.04
PTPN4P29074 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
PTPN4P29074 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN4P29074 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
PTPN4P29074 ZNRF2P3-201ENST00000424200 374 ntBASIC21.53■■□□□ 1.04
PTPN4P29074 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.53■■□□□ 1.04
PTPN4P29074 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
PTPN4P29074 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN4P29074 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.53■■□□□ 1.04
PTPN4P29074 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN4P29074 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.53■■□□□ 1.04
PTPN4P29074 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN4P29074 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.53■■□□□ 1.04
PTPN4P29074 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN4P29074 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
PTPN4P29074 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
PTPN4P29074 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN4P29074 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN4P29074 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms