Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.76■□□□□ 0.75
MSX1P28360 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.76■□□□□ 0.75
MSX1P28360 AL358852.1-201ENST00000623174 1268 ntBASIC19.76■□□□□ 0.75
MSX1P28360 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.76■□□□□ 0.75
MSX1P28360 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSX1P28360 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSX1P28360 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSX1P28360 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
MSX1P28360 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 AC027612.3-201ENST00000413684 1047 ntBASIC19.75■□□□□ 0.75
MSX1P28360 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.75■□□□□ 0.75
MSX1P28360 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.75■□□□□ 0.75
MSX1P28360 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
MSX1P28360 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 AC139530.1-201ENST00000575312 1977 ntBASIC19.75■□□□□ 0.75
MSX1P28360 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.75■□□□□ 0.75
MSX1P28360 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 OR7E47P-201ENST00000546390 1422 ntBASIC19.75■□□□□ 0.75
MSX1P28360 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.75■□□□□ 0.75
MSX1P28360 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX1P28360 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.74■□□□□ 0.75
MSX1P28360 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSX1P28360 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.74■□□□□ 0.75
MSX1P28360 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
MSX1P28360 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSX1P28360 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSX1P28360 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSX1P28360 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSX1P28360 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSX1P28360 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.74■□□□□ 0.75
MSX1P28360 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.74■□□□□ 0.75
MSX1P28360 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
MSX1P28360 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSX1P28360 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
MSX1P28360 DUX4L2-201ENST00000561772 1275 ntBASIC19.74■□□□□ 0.75
MSX1P28360 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.74■□□□□ 0.75
MSX1P28360 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.74■□□□□ 0.75
MSX1P28360 DUX4L6-201ENST00000626483 1275 ntBASIC19.74■□□□□ 0.75
MSX1P28360 DUX4L1-201ENST00000627662 1275 ntBASIC19.74■□□□□ 0.75
MSX1P28360 DUX4L8-201ENST00000629013 1275 ntBASIC19.74■□□□□ 0.75
MSX1P28360 DUX4L3-201ENST00000630187 1275 ntBASIC19.74■□□□□ 0.75
MSX1P28360 DUX4L7-201ENST00000630678 1275 ntBASIC19.74■□□□□ 0.75
MSX1P28360 DUX4L5-201ENST00000630834 1275 ntBASIC19.74■□□□□ 0.75
MSX1P28360 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.74■□□□□ 0.75
MSX1P28360 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.74■□□□□ 0.75
MSX1P28360 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSX1P28360 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSX1P28360 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.74■□□□□ 0.75
MSX1P28360 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.74■□□□□ 0.75
MSX1P28360 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
MSX1P28360 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSX1P28360 AC242852.2-201ENST00000615738 1807 ntBASIC19.74■□□□□ 0.75
MSX1P28360 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.74■□□□□ 0.75
MSX1P28360 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.74■□□□□ 0.75
MSX1P28360 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSX1P28360 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSX1P28360 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSX1P28360 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSX1P28360 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSX1P28360 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSX1P28360 AC123595.1-201ENST00000440769 1046 ntBASIC19.73■□□□□ 0.75
MSX1P28360 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSX1P28360 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.73■□□□□ 0.75
MSX1P28360 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSX1P28360 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.73■□□□□ 0.75
MSX1P28360 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.73■□□□□ 0.75
MSX1P28360 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSX1P28360 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.73■□□□□ 0.75
MSX1P28360 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSX1P28360 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.73■□□□□ 0.75
MSX1P28360 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
MSX1P28360 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
MSX1P28360 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.72■□□□□ 0.75
MSX1P28360 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.72■□□□□ 0.75
MSX1P28360 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.72■□□□□ 0.75
MSX1P28360 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.72■□□□□ 0.75
MSX1P28360 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
MSX1P28360 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 GUSBP5-202ENST00000510805 1989 ntBASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms