Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.76■□□□□ 0.91
LDLRP01130 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDLRP01130 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDLRP01130 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDLRP01130 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LDLRP01130 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LDLRP01130 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LDLRP01130 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.75■□□□□ 0.91
LDLRP01130 DUX4L19-201ENST00000557448 1267 ntBASIC20.75■□□□□ 0.91
LDLRP01130 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LDLRP01130 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LDLRP01130 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.75■□□□□ 0.91
LDLRP01130 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LDLRP01130 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.74■□□□□ 0.91
LDLRP01130 AC026310.3-201ENST00000625186 2373 ntBASIC20.74■□□□□ 0.91
LDLRP01130 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LDLRP01130 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.74■□□□□ 0.91
LDLRP01130 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LDLRP01130 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LDLRP01130 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LDLRP01130 AC004448.1-201ENST00000458332 883 ntBASIC20.74■□□□□ 0.91
LDLRP01130 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.74■□□□□ 0.91
LDLRP01130 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.74■□□□□ 0.91
LDLRP01130 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.74■□□□□ 0.91
LDLRP01130 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.74■□□□□ 0.91
LDLRP01130 AL353803.4-201ENST00000565882 1934 ntBASIC20.74■□□□□ 0.91
LDLRP01130 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
LDLRP01130 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.74■□□□□ 0.91
LDLRP01130 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
LDLRP01130 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LDLRP01130 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
LDLRP01130 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.74■□□□□ 0.91
LDLRP01130 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LDLRP01130 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LDLRP01130 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
LDLRP01130 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LDLRP01130 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LDLRP01130 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LDLRP01130 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.73■□□□□ 0.91
LDLRP01130 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LDLRP01130 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LDLRP01130 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LDLRP01130 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LDLRP01130 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
LDLRP01130 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.73■□□□□ 0.91
LDLRP01130 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.72■□□□□ 0.91
LDLRP01130 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LDLRP01130 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.72■□□□□ 0.91
LDLRP01130 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LDLRP01130 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LDLRP01130 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LDLRP01130 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LDLRP01130 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LDLRP01130 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
LDLRP01130 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LDLRP01130 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDLRP01130 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.71■□□□□ 0.91
LDLRP01130 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDLRP01130 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDLRP01130 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDLRP01130 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LDLRP01130 AC090192.1-201ENST00000517740 490 ntBASIC20.71■□□□□ 0.91
LDLRP01130 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDLRP01130 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDLRP01130 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LDLRP01130 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LDLRP01130 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
LDLRP01130 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
LDLRP01130 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
LDLRP01130 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.7■□□□□ 0.9
LDLRP01130 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LDLRP01130 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LDLRP01130 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.7■□□□□ 0.9
LDLRP01130 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LDLRP01130 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
LDLRP01130 CA15P2-201ENST00000611168 834 ntBASIC20.7■□□□□ 0.9
LDLRP01130 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LDLRP01130 RARRES2P11-201ENST00000635158 484 ntBASIC20.7■□□□□ 0.9
LDLRP01130 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.7■□□□□ 0.9
LDLRP01130 AC087742.1-201ENST00000575880 1738 ntBASIC20.7■□□□□ 0.9
LDLRP01130 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LDLRP01130 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.69■□□□□ 0.9
LDLRP01130 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDLRP01130 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.69■□□□□ 0.9
LDLRP01130 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.69■□□□□ 0.9
LDLRP01130 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.69■□□□□ 0.9
LDLRP01130 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LDLRP01130 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.69■□□□□ 0.9
LDLRP01130 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDLRP01130 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.69■□□□□ 0.9
LDLRP01130 RASA4CP-201ENST00000424092 1398 ntBASIC20.69■□□□□ 0.9
LDLRP01130 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDLRP01130 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LDLRP01130 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDLRP01130 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
LDLRP01130 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
LDLRP01130 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms