Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 ZNF692-207ENST00000468455 644 ntTSL 516.59■□□□□ 0.252e-9■□□□□ 10.9
CDC40O60508 ZNF692-227ENST00000533927 2026 ntTSL 1 (best)16.54■□□□□ 0.242e-9■□□□□ 10.9
CDC40O60508 ZNF692-214ENST00000483223 901 ntTSL 316.37■□□□□ 0.212e-9■□□□□ 10.9
CDC40O60508 ZNF692-222ENST00000528141 576 ntTSL 415.81■□□□□ 0.122e-9■□□□□ 10.9
CDC40O60508 ZNF692-206ENST00000463519 2704 ntTSL 1 (best)13.32□□□□□ -0.282e-9■□□□□ 10.9
CDC40O60508 ZNF692-230ENST00000534660 552 ntTSL 312.27□□□□□ -0.452e-9■□□□□ 10.9
CDC40O60508 ZNF692-216ENST00000491971 805 ntTSL 211.39□□□□□ -0.592e-9■□□□□ 10.9
CDC40O60508 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.27■□□□□ 0.515e-7■□□□□ 10.9
CDC40O60508 LUC7L-218ENST00000494366 668 ntTSL 317.19■□□□□ 0.347e-21■□□□□ 10.9
CDC40O60508 OXA1L-204ENST00000431881 889 ntTSL 315.1■□□□□ 0.017e-21■□□□□ 10.9
CDC40O60508 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.36□□□□□ -0.117e-21■□□□□ 10.9
CDC40O60508 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.74□□□□□ -0.217e-21■□□□□ 10.9
CDC40O60508 OXA1L-205ENST00000442110 691 ntTSL 513.35□□□□□ -0.277e-21■□□□□ 10.9
CDC40O60508 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.29□□□□□ -0.287e-21■□□□□ 10.9
CDC40O60508 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.367e-21■□□□□ 10.9
CDC40O60508 OXA1L-209ENST00000495424 1679 ntTSL 211.2□□□□□ -0.627e-21■□□□□ 10.9
CDC40O60508 OXA1L-206ENST00000473744 824 ntTSL 310.73□□□□□ -0.697e-21■□□□□ 10.9
CDC40O60508 OXA1L-207ENST00000481218 1596 ntTSL 57.74□□□□□ -1.177e-21■□□□□ 10.9
CDC40O60508 OXA1L-213ENST00000612549 2971 ntTSL 1 (best) BASIC7.53□□□□□ -1.27e-21■□□□□ 10.9
CDC40O60508 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.087e-8■□□□□ 10.9
CDC40O60508 DDX5-218ENST00000581693 2156 ntTSL 510.58□□□□□ -0.727e-8■□□□□ 10.9
CDC40O60508 DDX5-203ENST00000540698 2225 ntTSL 510.39□□□□□ -0.757e-8■□□□□ 10.9
CDC40O60508 DDX5-202ENST00000450599 2077 ntTSL 2 BASIC9.94□□□□□ -0.827e-8■□□□□ 10.9
CDC40O60508 DDX5-215ENST00000581230 3558 ntTSL 27.43□□□□□ -1.227e-8■□□□□ 10.9
CDC40O60508 OAZ1-205ENST00000589361 679 ntTSL 1 (best)14.64□□□□□ -0.076e-8■□□□□ 10.9
CDC40O60508 NAP1L4-210ENST00000492685 850 ntTSL 56.16□□□□□ -1.425e-7■□□□□ 10.9
CDC40O60508 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.3■□□□□ 0.521e-8■□□□□ 10.8
CDC40O60508 EEF1D-210ENST00000525223 610 ntTSL 313.14□□□□□ -0.311e-8■□□□□ 10.8
CDC40O60508 EEF1D-234ENST00000530616 749 ntTSL 312.47□□□□□ -0.411e-8■□□□□ 10.8
CDC40O60508 HNRNPH1-221ENST00000513230 248 ntTSL 320.7■□□□□ 0.92e-31■□□□□ 10.8
CDC40O60508 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.122e-6■□□□□ 10.8
CDC40O60508 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.13□□□□□ -0.152e-6■□□□□ 10.8
CDC40O60508 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC7.99□□□□□ -1.132e-6■□□□□ 10.8
CDC40O60508 PCM1-215ENST00000522275 2379 ntTSL 24.26□□□□□ -1.732e-6■□□□□ 10.8
CDC40O60508 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.59□□□□□ -22e-6■□□□□ 10.8
CDC40O60508 AL355987.2-201ENST00000471502 561 ntTSL 4 BASIC11.64□□□□□ -0.559e-7■□□□□ 10.8
CDC40O60508 RPL13A-206ENST00000476268 1623 ntTSL 316.47■□□□□ 0.232e-6■□□□□ 10.8
CDC40O60508 RPL13A-208ENST00000477613 796 ntTSL 516.15■□□□□ 0.182e-6■□□□□ 10.8
CDC40O60508 RPL13A-209ENST00000479992 850 ntTSL 314.65□□□□□ -0.062e-6■□□□□ 10.8
CDC40O60508 RPL13A-202ENST00000467825 660 ntTSL 513.86□□□□□ -0.192e-6■□□□□ 10.8
CDC40O60508 RPL13A-214ENST00000624069 1122 ntTSL 1 (best)13.68□□□□□ -0.222e-6■□□□□ 10.8
CDC40O60508 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.252e-6■□□□□ 10.8
CDC40O60508 RPL13A-212ENST00000488946 2312 ntTSL 212.82□□□□□ -0.362e-6■□□□□ 10.8
CDC40O60508 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC12.68□□□□□ -0.382e-6■□□□□ 10.8
CDC40O60508 RPL13A-210ENST00000484279 794 ntTSL 512.68□□□□□ -0.382e-6■□□□□ 10.8
CDC40O60508 SRRM2-216ENST00000573583 543 ntTSL 49.45□□□□□ -0.98e-20■□□□□ 10.8
CDC40O60508 ENC1-204ENST00000509284 571 ntTSL 48.36□□□□□ -1.078e-9■□□□□ 10.8
CDC40O60508 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.836e-10■□□□□ 10.7
CDC40O60508 FOXK2-204ENST00000527313 779 ntTSL 318.71■□□□□ 0.596e-10■□□□□ 10.7
CDC40O60508 FOXK2-202ENST00000473637 3462 ntTSL 1 (best)18.04■□□□□ 0.486e-10■□□□□ 10.7
CDC40O60508 FOXK2-206ENST00000531030 805 ntTSL 316.88■□□□□ 0.296e-10■□□□□ 10.7
CDC40O60508 ZNF692-223ENST00000530699 896 ntTSL 1 (best)15.45■□□□□ 0.066e-10■□□□□ 10.7
CDC40O60508 FOXK2-207ENST00000570585 756 ntTSL 312.81□□□□□ -0.366e-10■□□□□ 10.7
CDC40O60508 FOXK2-203ENST00000526383 786 ntTSL 512.81□□□□□ -0.366e-10■□□□□ 10.7
CDC40O60508 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.017e-6■□□□□ 10.7
CDC40O60508 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.387e-6■□□□□ 10.7
CDC40O60508 MAP4-207ENST00000426837 8920 ntAPPRIS ALT2 TSL 5 BASIC9.95□□□□□ -0.827e-6■□□□□ 10.7
CDC40O60508 NCL-207ENST00000461347 3967 ntTSL 213.38□□□□□ -0.272e-7■□□□□ 10.7
CDC40O60508 NCL-201ENST00000322723 4034 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.672e-7■□□□□ 10.7
CDC40O60508 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.44e-9■□□□□ 10.7
CDC40O60508 YLPM1-201ENST00000325680 7108 ntAPPRIS P2 TSL 5 BASIC11.66□□□□□ -0.544e-9■□□□□ 10.7
CDC40O60508 YLPM1-204ENST00000549197 2085 ntTSL 1 (best)8.49□□□□□ -1.054e-9■□□□□ 10.7
CDC40O60508 YLPM1-205ENST00000549293 5500 ntTSL 1 (best)7.58□□□□□ -1.24e-9■□□□□ 10.7
CDC40O60508 YLPM1-209ENST00000554107 4424 ntTSL 35.69□□□□□ -1.54e-9■□□□□ 10.7
CDC40O60508 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.25□□□□□ -0.135e-10■□□□□ 10.7
CDC40O60508 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.484e-9■□□□□ 10.7
CDC40O60508 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.024e-9■□□□□ 10.7
CDC40O60508 HNRNPA3-202ENST00000411529 5688 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.814e-9■□□□□ 10.7
CDC40O60508 MGST2-203ENST00000503816 1780 ntTSL 515.16■□□□□ 0.022e-13■□□□□ 10.6
CDC40O60508 MGST2-202ENST00000502587 663 ntTSL 212.39□□□□□ -0.432e-13■□□□□ 10.6
CDC40O60508 MGST2-206ENST00000515137 1013 ntTSL 1 (best)8.21□□□□□ -1.12e-13■□□□□ 10.6
CDC40O60508 MGST2-207ENST00000616265 1278 ntAPPRIS P1 TSL 4 BASIC8.08□□□□□ -1.122e-13■□□□□ 10.6
CDC40O60508 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.422e-13■□□□□ 10.6
CDC40O60508 MGST2-205ENST00000515067 437 ntTSL 35.38□□□□□ -1.552e-13■□□□□ 10.6
CDC40O60508 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.44□□□□□ -1.72e-13■□□□□ 10.6
CDC40O60508 TRIM24-206ENST00000497516 1515 ntTSL 513.08□□□□□ -0.322e-7■□□□□ 10.6
CDC40O60508 ZMYND8-202ENST00000311275 5362 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.743e-7■□□□□ 10.6
CDC40O60508 ZMYND8-217ENST00000536340 5273 ntAPPRIS ALT2 TSL 2 BASIC10□□□□□ -0.813e-7■□□□□ 10.6
CDC40O60508 ZMYND8-205ENST00000360911 4991 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.863e-7■□□□□ 10.6
CDC40O60508 ZMYND8-204ENST00000355972 5542 ntAPPRIS ALT2 TSL 2 BASIC9.14□□□□□ -0.953e-7■□□□□ 10.6
CDC40O60508 ZMYND8-220ENST00000617418 3411 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.963e-7■□□□□ 10.6
CDC40O60508 ZMYND8-214ENST00000467200 3634 ntAPPRIS ALT2 TSL 1 (best)8.84□□□□□ -0.993e-7■□□□□ 10.6
CDC40O60508 ZMYND8-215ENST00000468376 4064 ntTSL 1 (best)8.72□□□□□ -1.013e-7■□□□□ 10.6
CDC40O60508 ZMYND8-207ENST00000396281 5511 ntAPPRIS ALT2 TSL 2 BASIC8.39□□□□□ -1.073e-7■□□□□ 10.6
CDC40O60508 ZMYND8-213ENST00000461685 3567 ntAPPRIS P4 TSL 1 (best) BASIC8.28□□□□□ -1.083e-7■□□□□ 10.6
CDC40O60508 ZMYND8-219ENST00000611941 5090 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.123e-7■□□□□ 10.6
CDC40O60508 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.123e-7■□□□□ 10.6
CDC40O60508 ZMYND8-218ENST00000540497 3405 ntAPPRIS ALT2 TSL 1 (best) BASIC8.01□□□□□ -1.133e-7■□□□□ 10.6
CDC40O60508 ZMYND8-203ENST00000352431 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.153e-7■□□□□ 10.6
CDC40O60508 ZMYND8-212ENST00000458360 3729 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.163e-7■□□□□ 10.6
CDC40O60508 ZMYND8-201ENST00000262975 4139 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.163e-7■□□□□ 10.6
CDC40O60508 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.173e-7■□□□□ 10.6
CDC40O60508 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC7.51□□□□□ -1.213e-7■□□□□ 10.6
CDC40O60508 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.253e-7■□□□□ 10.6
CDC40O60508 TF-210ENST00000482271 659 ntTSL 417.23■□□□□ 0.352e-11■□□□□ 10.6
CDC40O60508 TF-211ENST00000485977 580 ntTSL 317.23■□□□□ 0.352e-11■□□□□ 10.6
CDC40O60508 TF-212ENST00000493011 999 ntTSL 217.23■□□□□ 0.352e-11■□□□□ 10.6
CDC40O60508 TF-213ENST00000494430 594 ntTSL 417.23■□□□□ 0.352e-11■□□□□ 10.6
CDC40O60508 TF-201ENST00000402696 2968 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.642e-11■□□□□ 10.6
CDC40O60508 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC25.31■■□□□ 1.644e-7■□□□□ 10.6
Retrieved 100 of 5,364 protein–RNA pairs in 49.4 ms