Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC26.39■■□□□ 1.82
Col12a1Q60847 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
Col12a1Q60847 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Col12a1Q60847 Gm42809-201ENSMUST00000198429 1138 ntBASIC26.36■■□□□ 1.81
Col12a1Q60847 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC26.35■■□□□ 1.81
Col12a1Q60847 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Col12a1Q60847 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC26.34■■□□□ 1.81
Col12a1Q60847 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC26.34■■□□□ 1.81
Col12a1Q60847 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Col12a1Q60847 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC26.3■■□□□ 1.8
Col12a1Q60847 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC26.28■■□□□ 1.8
Col12a1Q60847 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC26.28■■□□□ 1.8
Col12a1Q60847 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC26.27■■□□□ 1.8
Col12a1Q60847 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
Col12a1Q60847 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Col12a1Q60847 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC26.25■■□□□ 1.79
Col12a1Q60847 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Col12a1Q60847 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Col12a1Q60847 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC26.23■■□□□ 1.79
Col12a1Q60847 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Col12a1Q60847 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
Col12a1Q60847 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC26.19■■□□□ 1.78
Col12a1Q60847 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC26.19■■□□□ 1.78
Col12a1Q60847 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Col12a1Q60847 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Col12a1Q60847 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Col12a1Q60847 Mir6538-201ENSMUST00000183713 110 ntBASIC26.19■■□□□ 1.78
Col12a1Q60847 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col12a1Q60847 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Col12a1Q60847 Gm7432-201ENSMUST00000210343 879 ntBASIC26.17■■□□□ 1.78
Col12a1Q60847 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Col12a1Q60847 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Col12a1Q60847 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Col12a1Q60847 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Col12a1Q60847 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Col12a1Q60847 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.12■■□□□ 1.77
Col12a1Q60847 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Col12a1Q60847 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Col12a1Q60847 Gm11175-201ENSMUST00000116172 543 ntBASIC26.11■■□□□ 1.77
Col12a1Q60847 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Col12a1Q60847 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Col12a1Q60847 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Col12a1Q60847 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Col12a1Q60847 Cap2-205ENSMUST00000225824 1634 ntBASIC26.08■■□□□ 1.77
Col12a1Q60847 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Col12a1Q60847 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Col12a1Q60847 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
Col12a1Q60847 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Col12a1Q60847 AC157572.2-201ENSMUST00000226970 908 ntBASIC26.05■■□□□ 1.76
Col12a1Q60847 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Col12a1Q60847 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC26.05■■□□□ 1.76
Col12a1Q60847 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Col12a1Q60847 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Col12a1Q60847 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
Col12a1Q60847 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC26.01■■□□□ 1.75
Col12a1Q60847 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
Col12a1Q60847 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
Col12a1Q60847 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Col12a1Q60847 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Col12a1Q60847 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Col12a1Q60847 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC25.98■■□□□ 1.75
Col12a1Q60847 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
Col12a1Q60847 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC25.96■■□□□ 1.75
Col12a1Q60847 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Col12a1Q60847 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.75
Col12a1Q60847 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.74
Col12a1Q60847 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Col12a1Q60847 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Col12a1Q60847 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Col12a1Q60847 Gm11599-201ENSMUST00000118720 878 ntBASIC25.93■■□□□ 1.74
Col12a1Q60847 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC25.93■■□□□ 1.74
Col12a1Q60847 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC25.92■■□□□ 1.74
Col12a1Q60847 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC25.9■■□□□ 1.74
Col12a1Q60847 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Col12a1Q60847 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
Col12a1Q60847 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC25.89■■□□□ 1.74
Col12a1Q60847 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Col12a1Q60847 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
Col12a1Q60847 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.73
Col12a1Q60847 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
Col12a1Q60847 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Col12a1Q60847 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
Col12a1Q60847 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Col12a1Q60847 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Col12a1Q60847 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Col12a1Q60847 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
Col12a1Q60847 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Col12a1Q60847 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Col12a1Q60847 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC25.83■■□□□ 1.72
Col12a1Q60847 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
Col12a1Q60847 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Col12a1Q60847 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Col12a1Q60847 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Col12a1Q60847 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC25.79■■□□□ 1.72
Col12a1Q60847 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Col12a1Q60847 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Col12a1Q60847 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Col12a1Q60847 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC25.76■■□□□ 1.71
Col12a1Q60847 Nkain2-201ENSMUST00000092602 558 ntBASIC25.76■■□□□ 1.71
Col12a1Q60847 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms