Protein–RNA interactions for Protein: O88895

Hdac3, Histone deacetylase 3, mousemouse

Predictions only

Length 424 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hdac3O88895 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Hdac3O88895 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC22.34■■□□□ 1.17
Hdac3O88895 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Hdac3O88895 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC22.31■■□□□ 1.16
Hdac3O88895 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Hdac3O88895 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Hdac3O88895 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
Hdac3O88895 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Hdac3O88895 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Hdac3O88895 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Hdac3O88895 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Hdac3O88895 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Hdac3O88895 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Hdac3O88895 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Hdac3O88895 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
Hdac3O88895 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Hdac3O88895 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Hdac3O88895 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Hdac3O88895 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC22.25■■□□□ 1.15
Hdac3O88895 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
Hdac3O88895 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
Hdac3O88895 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Hdac3O88895 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
Hdac3O88895 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Hdac3O88895 Gm43445-201ENSMUST00000198564 2091 ntBASIC22.24■■□□□ 1.15
Hdac3O88895 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Hdac3O88895 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Hdac3O88895 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Hdac3O88895 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Hdac3O88895 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Hdac3O88895 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC22.22■■□□□ 1.15
Hdac3O88895 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Hdac3O88895 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Hdac3O88895 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Hdac3O88895 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC22.2■■□□□ 1.15
Hdac3O88895 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Hdac3O88895 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Hdac3O88895 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
Hdac3O88895 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Hdac3O88895 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Hdac3O88895 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC22.17■■□□□ 1.14
Hdac3O88895 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC22.16■■□□□ 1.14
Hdac3O88895 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC22.16■■□□□ 1.14
Hdac3O88895 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Hdac3O88895 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Hdac3O88895 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Hdac3O88895 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Hdac3O88895 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Hdac3O88895 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
Hdac3O88895 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC22.13■■□□□ 1.13
Hdac3O88895 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
Hdac3O88895 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Hdac3O88895 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Hdac3O88895 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Hdac3O88895 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Hdac3O88895 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Hdac3O88895 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Hdac3O88895 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Hdac3O88895 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Hdac3O88895 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Hdac3O88895 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Hdac3O88895 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC22.08■■□□□ 1.12
Hdac3O88895 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Hdac3O88895 Gm16148-201ENSMUST00000119653 893 ntBASIC22.07■■□□□ 1.12
Hdac3O88895 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Hdac3O88895 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC22.06■■□□□ 1.12
Hdac3O88895 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Hdac3O88895 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
Hdac3O88895 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Hdac3O88895 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Hdac3O88895 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC22.03■■□□□ 1.12
Hdac3O88895 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Hdac3O88895 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Hdac3O88895 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC22.01■■□□□ 1.11
Hdac3O88895 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Hdac3O88895 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Hdac3O88895 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Hdac3O88895 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Hdac3O88895 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Hdac3O88895 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Hdac3O88895 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Hdac3O88895 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Hdac3O88895 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Hdac3O88895 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Hdac3O88895 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
Hdac3O88895 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
Hdac3O88895 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Hdac3O88895 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC21.94■■□□□ 1.1
Hdac3O88895 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
Hdac3O88895 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Hdac3O88895 Amer2-203ENSMUST00000225247 2662 ntBASIC21.93■■□□□ 1.1
Hdac3O88895 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
Hdac3O88895 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC21.92■■□□□ 1.1
Hdac3O88895 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Hdac3O88895 Fezf2-202ENSMUST00000224023 1917 ntBASIC21.9■■□□□ 1.1
Hdac3O88895 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Hdac3O88895 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
Hdac3O88895 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
Hdac3O88895 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Hdac3O88895 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms