Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.9■■□□□ 1.58
DDX41Q9UJV9 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC24.89■■□□□ 1.58
DDX41Q9UJV9 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
DDX41Q9UJV9 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
DDX41Q9UJV9 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC24.89■■□□□ 1.58
DDX41Q9UJV9 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
DDX41Q9UJV9 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC24.89■■□□□ 1.58
DDX41Q9UJV9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
DDX41Q9UJV9 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
DDX41Q9UJV9 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC24.89■■□□□ 1.58
DDX41Q9UJV9 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
DDX41Q9UJV9 AC022517.1-201ENST00000592429 346 ntBASIC24.89■■□□□ 1.58
DDX41Q9UJV9 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC24.89■■□□□ 1.58
DDX41Q9UJV9 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
DDX41Q9UJV9 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
DDX41Q9UJV9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.57
DDX41Q9UJV9 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC24.89■■□□□ 1.57
DDX41Q9UJV9 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.57
DDX41Q9UJV9 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
DDX41Q9UJV9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
DDX41Q9UJV9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.88■■□□□ 1.57
DDX41Q9UJV9 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC24.88■■□□□ 1.57
DDX41Q9UJV9 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC24.88■■□□□ 1.57
DDX41Q9UJV9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC24.88■■□□□ 1.57
DDX41Q9UJV9 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.88■■□□□ 1.57
DDX41Q9UJV9 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC24.88■■□□□ 1.57
DDX41Q9UJV9 AC105233.4-201ENST00000642045 216 ntBASIC24.88■■□□□ 1.57
DDX41Q9UJV9 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC24.88■■□□□ 1.57
DDX41Q9UJV9 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
DDX41Q9UJV9 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 AC233723.2-201ENST00000623798 2106 ntBASIC24.87■■□□□ 1.57
DDX41Q9UJV9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC24.87■■□□□ 1.57
DDX41Q9UJV9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 TERF1P2-201ENST00000583350 1212 ntBASIC24.86■■□□□ 1.57
DDX41Q9UJV9 IKBKGP1-201ENST00000612193 1073 ntBASIC24.86■■□□□ 1.57
DDX41Q9UJV9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DDX41Q9UJV9 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 LINC02228-203ENST00000641970 1355 ntBASIC24.85■■□□□ 1.57
DDX41Q9UJV9 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 NT5C3AP1-201ENST00000394500 1012 ntBASIC24.85■■□□□ 1.57
DDX41Q9UJV9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
DDX41Q9UJV9 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX41Q9UJV9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
DDX41Q9UJV9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
DDX41Q9UJV9 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC24.84■■□□□ 1.57
DDX41Q9UJV9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.84■■□□□ 1.57
DDX41Q9UJV9 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
DDX41Q9UJV9 KRT18P14-201ENST00000534205 1250 ntBASIC24.84■■□□□ 1.57
DDX41Q9UJV9 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
DDX41Q9UJV9 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.84■■□□□ 1.57
DDX41Q9UJV9 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
DDX41Q9UJV9 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
DDX41Q9UJV9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC24.83■■□□□ 1.57
DDX41Q9UJV9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
DDX41Q9UJV9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
DDX41Q9UJV9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
DDX41Q9UJV9 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC24.83■■□□□ 1.57
DDX41Q9UJV9 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC24.83■■□□□ 1.57
DDX41Q9UJV9 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC24.83■■□□□ 1.57
DDX41Q9UJV9 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.83■■□□□ 1.57
DDX41Q9UJV9 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
DDX41Q9UJV9 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
DDX41Q9UJV9 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
DDX41Q9UJV9 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC24.83■■□□□ 1.56
DDX41Q9UJV9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC24.82■■□□□ 1.56
DDX41Q9UJV9 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC24.82■■□□□ 1.56
DDX41Q9UJV9 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC24.82■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms