Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC23.21■■□□□ 1.31
ZNF560Q96MR9 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
ZNF560Q96MR9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.21■■□□□ 1.31
ZNF560Q96MR9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC23.21■■□□□ 1.31
ZNF560Q96MR9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
ZNF560Q96MR9 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
ZNF560Q96MR9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC23.21■■□□□ 1.31
ZNF560Q96MR9 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 DUX4L2-201ENST00000561772 1275 ntBASIC23.2■■□□□ 1.3
ZNF560Q96MR9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 DUX4L6-201ENST00000626483 1275 ntBASIC23.2■■□□□ 1.3
ZNF560Q96MR9 DUX4L1-201ENST00000627662 1275 ntBASIC23.2■■□□□ 1.3
ZNF560Q96MR9 DUX4L8-201ENST00000629013 1275 ntBASIC23.2■■□□□ 1.3
ZNF560Q96MR9 DUX4L3-201ENST00000630187 1275 ntBASIC23.2■■□□□ 1.3
ZNF560Q96MR9 DUX4L7-201ENST00000630678 1275 ntBASIC23.2■■□□□ 1.3
ZNF560Q96MR9 DUX4L5-201ENST00000630834 1275 ntBASIC23.2■■□□□ 1.3
ZNF560Q96MR9 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ZNF560Q96MR9 LINC00526-201ENST00000581067 1875 ntBASIC23.19■■□□□ 1.3
ZNF560Q96MR9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 C9orf163-202ENST00000624034 2573 ntBASIC23.19■■□□□ 1.3
ZNF560Q96MR9 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23.19■■□□□ 1.3
ZNF560Q96MR9 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 AC009237.3-201ENST00000393279 1427 ntBASIC23.18■■□□□ 1.3
ZNF560Q96MR9 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 AL162430.1-201ENST00000480705 870 ntBASIC23.18■■□□□ 1.3
ZNF560Q96MR9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 AL034346.1-201ENST00000568244 1277 ntBASIC23.18■■□□□ 1.3
ZNF560Q96MR9 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 C1orf229-201ENST00000623686 2258 ntBASIC23.18■■□□□ 1.3
ZNF560Q96MR9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC23.18■■□□□ 1.3
ZNF560Q96MR9 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ZNF560Q96MR9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF560Q96MR9 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF560Q96MR9 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF560Q96MR9 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ZNF560Q96MR9 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.16■■□□□ 1.3
ZNF560Q96MR9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC23.16■■□□□ 1.3
ZNF560Q96MR9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.16■■□□□ 1.3
ZNF560Q96MR9 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC23.16■■□□□ 1.3
ZNF560Q96MR9 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.16■■□□□ 1.3
ZNF560Q96MR9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 AP004607.7-201ENST00000527152 1677 ntBASIC23.15■■□□□ 1.3
ZNF560Q96MR9 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
ZNF560Q96MR9 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms