Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC28.37■■■□□ 2.13
RTF1Q92541 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC28.36■■■□□ 2.13
RTF1Q92541 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
RTF1Q92541 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC28.36■■■□□ 2.13
RTF1Q92541 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC28.36■■■□□ 2.13
RTF1Q92541 AL137784.2-201ENST00000607332 1000 ntBASIC28.36■■■□□ 2.13
RTF1Q92541 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RTF1Q92541 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
RTF1Q92541 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
RTF1Q92541 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RTF1Q92541 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RTF1Q92541 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RTF1Q92541 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC28.35■■■□□ 2.13
RTF1Q92541 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC28.35■■■□□ 2.13
RTF1Q92541 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC28.35■■■□□ 2.13
RTF1Q92541 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC28.35■■■□□ 2.13
RTF1Q92541 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RTF1Q92541 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC28.35■■■□□ 2.13
RTF1Q92541 AC009237.3-201ENST00000393279 1427 ntBASIC28.35■■■□□ 2.13
RTF1Q92541 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
RTF1Q92541 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC28.34■■■□□ 2.13
RTF1Q92541 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC28.34■■■□□ 2.13
RTF1Q92541 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
RTF1Q92541 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RTF1Q92541 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RTF1Q92541 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC28.34■■■□□ 2.13
RTF1Q92541 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC28.34■■■□□ 2.13
RTF1Q92541 GALNS-213ENST00000569433 723 ntTSL 3 BASIC28.34■■■□□ 2.13
RTF1Q92541 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC28.34■■■□□ 2.13
RTF1Q92541 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC28.34■■■□□ 2.13
RTF1Q92541 AC092437.1-201ENST00000624794 1048 ntBASIC28.34■■■□□ 2.13
RTF1Q92541 CPT2-209ENST00000636935 803 ntTSL 5 BASIC28.34■■■□□ 2.13
RTF1Q92541 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
RTF1Q92541 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RTF1Q92541 DUSP8P5-201ENST00000422884 1815 ntBASIC28.34■■■□□ 2.13
RTF1Q92541 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
RTF1Q92541 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC28.33■■■□□ 2.13
RTF1Q92541 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
RTF1Q92541 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
RTF1Q92541 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC28.33■■■□□ 2.13
RTF1Q92541 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC28.33■■■□□ 2.13
RTF1Q92541 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
RTF1Q92541 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC28.33■■■□□ 2.12
RTF1Q92541 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RTF1Q92541 AC005224.4-201ENST00000583262 1652 ntBASIC28.32■■■□□ 2.12
RTF1Q92541 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RTF1Q92541 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RTF1Q92541 KRT18P61-201ENST00000585825 1298 ntBASIC28.32■■■□□ 2.12
RTF1Q92541 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RTF1Q92541 AP004607.4-201ENST00000530158 1459 ntBASIC28.32■■■□□ 2.12
RTF1Q92541 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RTF1Q92541 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RTF1Q92541 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
RTF1Q92541 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RTF1Q92541 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RTF1Q92541 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
RTF1Q92541 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RTF1Q92541 AC079140.4-201ENST00000507448 529 ntBASIC28.31■■■□□ 2.12
RTF1Q92541 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC28.31■■■□□ 2.12
RTF1Q92541 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC28.31■■■□□ 2.12
RTF1Q92541 AC004854.2-201ENST00000608450 1441 ntBASIC28.31■■■□□ 2.12
RTF1Q92541 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RTF1Q92541 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RTF1Q92541 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC28.31■■■□□ 2.12
RTF1Q92541 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RTF1Q92541 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC28.31■■■□□ 2.12
RTF1Q92541 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTF1Q92541 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC28.3■■■□□ 2.12
RTF1Q92541 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTF1Q92541 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTF1Q92541 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTF1Q92541 OR7E47P-201ENST00000546390 1422 ntBASIC28.3■■■□□ 2.12
RTF1Q92541 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RTF1Q92541 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTF1Q92541 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC28.3■■■□□ 2.12
RTF1Q92541 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC28.3■■■□□ 2.12
RTF1Q92541 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC28.3■■■□□ 2.12
RTF1Q92541 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC28.3■■■□□ 2.12
RTF1Q92541 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTF1Q92541 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
RTF1Q92541 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RTF1Q92541 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RTF1Q92541 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC28.29■■■□□ 2.12
RTF1Q92541 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
RTF1Q92541 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC28.29■■■□□ 2.12
RTF1Q92541 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC28.29■■■□□ 2.12
RTF1Q92541 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC28.29■■■□□ 2.12
RTF1Q92541 AC087742.1-201ENST00000575880 1738 ntBASIC28.29■■■□□ 2.12
RTF1Q92541 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RTF1Q92541 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RTF1Q92541 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RTF1Q92541 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
RTF1Q92541 AC004911.1-201ENST00000416316 871 ntBASIC28.28■■■□□ 2.12
RTF1Q92541 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RTF1Q92541 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC28.28■■■□□ 2.12
RTF1Q92541 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC28.28■■■□□ 2.12
RTF1Q92541 PXK-203ENST00000383715 1756 ntTSL 5 BASIC28.28■■■□□ 2.12
RTF1Q92541 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RTF1Q92541 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RTF1Q92541 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms