Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 AC010542.4-201ENST00000563151 1910 ntBASIC20.06■□□□□ 0.8
DEPDC4Q8N2C3 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 AC144652.1-201ENST00000609974 1624 ntBASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.05■□□□□ 0.8
DEPDC4Q8N2C3 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
DEPDC4Q8N2C3 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
DEPDC4Q8N2C3 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
DEPDC4Q8N2C3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
DEPDC4Q8N2C3 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.04■□□□□ 0.8
DEPDC4Q8N2C3 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.04■□□□□ 0.8
DEPDC4Q8N2C3 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.04■□□□□ 0.8
DEPDC4Q8N2C3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.04■□□□□ 0.8
DEPDC4Q8N2C3 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.04■□□□□ 0.8
DEPDC4Q8N2C3 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
DEPDC4Q8N2C3 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
DEPDC4Q8N2C3 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.03■□□□□ 0.8
DEPDC4Q8N2C3 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
DEPDC4Q8N2C3 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
DEPDC4Q8N2C3 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
DEPDC4Q8N2C3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.03■□□□□ 0.8
DEPDC4Q8N2C3 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
DEPDC4Q8N2C3 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.03■□□□□ 0.8
DEPDC4Q8N2C3 AC004448.1-201ENST00000458332 883 ntBASIC20.03■□□□□ 0.8
DEPDC4Q8N2C3 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.03■□□□□ 0.8
DEPDC4Q8N2C3 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.03■□□□□ 0.8
DEPDC4Q8N2C3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
DEPDC4Q8N2C3 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.02■□□□□ 0.8
DEPDC4Q8N2C3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
DEPDC4Q8N2C3 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
DEPDC4Q8N2C3 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
DEPDC4Q8N2C3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
DEPDC4Q8N2C3 MIR6722-201ENST00000617286 78 ntBASIC20.02■□□□□ 0.8
DEPDC4Q8N2C3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.02■□□□□ 0.8
DEPDC4Q8N2C3 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
DEPDC4Q8N2C3 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
DEPDC4Q8N2C3 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
DEPDC4Q8N2C3 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
DEPDC4Q8N2C3 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.02■□□□□ 0.79
DEPDC4Q8N2C3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.02■□□□□ 0.79
DEPDC4Q8N2C3 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
DEPDC4Q8N2C3 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
DEPDC4Q8N2C3 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 SNX5-217ENST00000606557 1087 ntBASIC20■□□□□ 0.79
DEPDC4Q8N2C3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20■□□□□ 0.79
DEPDC4Q8N2C3 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
DEPDC4Q8N2C3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
DEPDC4Q8N2C3 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
DEPDC4Q8N2C3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
DEPDC4Q8N2C3 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
DEPDC4Q8N2C3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms