Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.38■■□□□ 1.01
SRP54P61011 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.38■■□□□ 1.01
SRP54P61011 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
SRP54P61011 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SRP54P61011 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
SRP54P61011 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SRP54P61011 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.37■■□□□ 1.01
SRP54P61011 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SRP54P61011 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.37■■□□□ 1.01
SRP54P61011 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.37■■□□□ 1.01
SRP54P61011 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.37■■□□□ 1.01
SRP54P61011 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SRP54P61011 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.37■■□□□ 1.01
SRP54P61011 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.37■■□□□ 1.01
SRP54P61011 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SRP54P61011 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SRP54P61011 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.36■■□□□ 1.01
SRP54P61011 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SRP54P61011 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
SRP54P61011 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SRP54P61011 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SRP54P61011 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SRP54P61011 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.36■■□□□ 1.01
SRP54P61011 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.36■■□□□ 1.01
SRP54P61011 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.36■■□□□ 1.01
SRP54P61011 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.36■■□□□ 1.01
SRP54P61011 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
SRP54P61011 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SRP54P61011 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.35■■□□□ 1.01
SRP54P61011 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SRP54P61011 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.35■■□□□ 1.01
SRP54P61011 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
SRP54P61011 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.35■■□□□ 1.01
SRP54P61011 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.35■■□□□ 1.01
SRP54P61011 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.35■■□□□ 1.01
SRP54P61011 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SRP54P61011 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SRP54P61011 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
SRP54P61011 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SRP54P61011 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SRP54P61011 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.34■■□□□ 1.01
SRP54P61011 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.34■■□□□ 1.01
SRP54P61011 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SRP54P61011 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.34■■□□□ 1.01
SRP54P61011 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.34■■□□□ 1.01
SRP54P61011 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.34■■□□□ 1.01
SRP54P61011 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.34■■□□□ 1.01
SRP54P61011 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.34■■□□□ 1.01
SRP54P61011 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
SRP54P61011 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SRP54P61011 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SRP54P61011 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SRP54P61011 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
SRP54P61011 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SRP54P61011 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
SRP54P61011 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SRP54P61011 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
SRP54P61011 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SRP54P61011 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
SRP54P61011 AC004911.1-201ENST00000416316 871 ntBASIC21.33■■□□□ 1.01
SRP54P61011 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.33■■□□□ 1.01
SRP54P61011 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.33■■□□□ 1.01
SRP54P61011 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.33■■□□□ 1.01
SRP54P61011 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.33■■□□□ 1.01
SRP54P61011 KRT18P61-201ENST00000585825 1298 ntBASIC21.33■■□□□ 1.01
SRP54P61011 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SRP54P61011 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SRP54P61011 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
SRP54P61011 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.33■■□□□ 1
SRP54P61011 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.32■■□□□ 1
SRP54P61011 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SRP54P61011 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.32■■□□□ 1
SRP54P61011 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.32■■□□□ 1
SRP54P61011 AC079089.2-201ENST00000531211 1277 ntBASIC21.32■■□□□ 1
SRP54P61011 RARRES2P11-201ENST00000635158 484 ntBASIC21.32■■□□□ 1
SRP54P61011 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.32■■□□□ 1
SRP54P61011 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.32■■□□□ 1
SRP54P61011 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.32■■□□□ 1
SRP54P61011 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SRP54P61011 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SRP54P61011 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.32■■□□□ 1
SRP54P61011 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.32■■□□□ 1
SRP54P61011 AP004607.4-201ENST00000530158 1459 ntBASIC21.32■■□□□ 1
SRP54P61011 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.32■■□□□ 1
SRP54P61011 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SRP54P61011 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
SRP54P61011 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.31■■□□□ 1
SRP54P61011 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SRP54P61011 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SRP54P61011 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.31■■□□□ 1
SRP54P61011 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.31■■□□□ 1
SRP54P61011 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.31■■□□□ 1
SRP54P61011 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.31■■□□□ 1
SRP54P61011 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.31■■□□□ 1
SRP54P61011 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SRP54P61011 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.31■■□□□ 1
SRP54P61011 AC004854.2-201ENST00000608450 1441 ntBASIC21.3■■□□□ 1
SRP54P61011 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SRP54P61011 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SRP54P61011 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms