Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.35■□□□□ 0.69
CLRN1P58418 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.35■□□□□ 0.69
CLRN1P58418 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.35■□□□□ 0.69
CLRN1P58418 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN1P58418 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN1P58418 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN1P58418 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CLRN1P58418 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.34■□□□□ 0.69
CLRN1P58418 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.34■□□□□ 0.69
CLRN1P58418 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.34■□□□□ 0.69
CLRN1P58418 UNC93B3-201ENST00000308076 687 ntBASIC19.34■□□□□ 0.69
CLRN1P58418 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.34■□□□□ 0.69
CLRN1P58418 AC010525.1-201ENST00000585559 441 ntBASIC19.34■□□□□ 0.69
CLRN1P58418 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CLRN1P58418 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CLRN1P58418 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN1P58418 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLRN1P58418 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.33■□□□□ 0.69
CLRN1P58418 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLRN1P58418 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.33■□□□□ 0.68
CLRN1P58418 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLRN1P58418 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLRN1P58418 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLRN1P58418 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLRN1P58418 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLRN1P58418 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.33■□□□□ 0.68
CLRN1P58418 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
CLRN1P58418 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.32■□□□□ 0.68
CLRN1P58418 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN1P58418 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN1P58418 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN1P58418 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN1P58418 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CLRN1P58418 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CLRN1P58418 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CLRN1P58418 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.32■□□□□ 0.68
CLRN1P58418 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.32■□□□□ 0.68
CLRN1P58418 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
CLRN1P58418 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN1P58418 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN1P58418 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
CLRN1P58418 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN1P58418 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN1P58418 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN1P58418 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN1P58418 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.32■□□□□ 0.68
CLRN1P58418 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN1P58418 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN1P58418 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN1P58418 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.31■□□□□ 0.68
CLRN1P58418 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.31■□□□□ 0.68
CLRN1P58418 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.31■□□□□ 0.68
CLRN1P58418 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN1P58418 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CLRN1P58418 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.31■□□□□ 0.68
CLRN1P58418 AL136162.1-201ENST00000607711 1078 ntBASIC19.31■□□□□ 0.68
CLRN1P58418 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN1P58418 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN1P58418 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CLRN1P58418 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN1P58418 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CLRN1P58418 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN1P58418 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CLRN1P58418 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CLRN1P58418 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLRN1P58418 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLRN1P58418 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CLRN1P58418 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLRN1P58418 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLRN1P58418 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.3■□□□□ 0.68
CLRN1P58418 SLC47A1P1-202ENST00000449666 945 ntBASIC19.3■□□□□ 0.68
CLRN1P58418 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.3■□□□□ 0.68
CLRN1P58418 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLRN1P58418 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CLRN1P58418 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CLRN1P58418 C11orf96-202ENST00000528572 1834 ntBASIC19.3■□□□□ 0.68
CLRN1P58418 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLRN1P58418 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN1P58418 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN1P58418 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN1P58418 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
CLRN1P58418 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN1P58418 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN1P58418 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN1P58418 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN1P58418 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CLRN1P58418 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.29■□□□□ 0.68
CLRN1P58418 AC010141.3-201ENST00000456659 717 ntBASIC19.29■□□□□ 0.68
CLRN1P58418 AC079089.2-201ENST00000531211 1277 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms