Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PKNOX1P55347 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.21■□□□□ 0.99
PKNOX1P55347 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PKNOX1P55347 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PKNOX1P55347 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.2■□□□□ 0.98
PKNOX1P55347 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PKNOX1P55347 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PKNOX1P55347 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PKNOX1P55347 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PKNOX1P55347 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
PKNOX1P55347 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
PKNOX1P55347 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PKNOX1P55347 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.2■□□□□ 0.98
PKNOX1P55347 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.2■□□□□ 0.98
PKNOX1P55347 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PKNOX1P55347 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.2■□□□□ 0.98
PKNOX1P55347 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
PKNOX1P55347 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PKNOX1P55347 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.19■□□□□ 0.98
PKNOX1P55347 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
PKNOX1P55347 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PKNOX1P55347 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
PKNOX1P55347 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.19■□□□□ 0.98
PKNOX1P55347 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PKNOX1P55347 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PKNOX1P55347 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
PKNOX1P55347 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.19■□□□□ 0.98
PKNOX1P55347 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.19■□□□□ 0.98
PKNOX1P55347 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
PKNOX1P55347 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PKNOX1P55347 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
PKNOX1P55347 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
PKNOX1P55347 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PKNOX1P55347 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.19■□□□□ 0.98
PKNOX1P55347 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
PKNOX1P55347 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PKNOX1P55347 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PKNOX1P55347 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.18■□□□□ 0.98
PKNOX1P55347 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
PKNOX1P55347 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
PKNOX1P55347 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PKNOX1P55347 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
PKNOX1P55347 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.18■□□□□ 0.98
PKNOX1P55347 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.18■□□□□ 0.98
PKNOX1P55347 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.18■□□□□ 0.98
PKNOX1P55347 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.18■□□□□ 0.98
PKNOX1P55347 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PKNOX1P55347 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PKNOX1P55347 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.18■□□□□ 0.98
PKNOX1P55347 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PKNOX1P55347 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PKNOX1P55347 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.17■□□□□ 0.98
PKNOX1P55347 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.17■□□□□ 0.98
PKNOX1P55347 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.17■□□□□ 0.98
PKNOX1P55347 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.17■□□□□ 0.98
PKNOX1P55347 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PKNOX1P55347 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PKNOX1P55347 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.16■□□□□ 0.98
PKNOX1P55347 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PKNOX1P55347 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.16■□□□□ 0.98
PKNOX1P55347 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PKNOX1P55347 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PKNOX1P55347 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
PKNOX1P55347 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.16■□□□□ 0.98
PKNOX1P55347 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PKNOX1P55347 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PKNOX1P55347 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PKNOX1P55347 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PKNOX1P55347 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.15■□□□□ 0.98
PKNOX1P55347 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
PKNOX1P55347 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PKNOX1P55347 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PKNOX1P55347 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PKNOX1P55347 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
PKNOX1P55347 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.15■□□□□ 0.98
PKNOX1P55347 KRT16P3-201ENST00000439127 1283 ntBASIC21.15■□□□□ 0.98
PKNOX1P55347 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.15■□□□□ 0.98
PKNOX1P55347 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.15■□□□□ 0.98
PKNOX1P55347 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.15■□□□□ 0.98
PKNOX1P55347 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.15■□□□□ 0.98
PKNOX1P55347 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.15■□□□□ 0.98
PKNOX1P55347 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
PKNOX1P55347 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.14■□□□□ 0.98
PKNOX1P55347 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
PKNOX1P55347 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
PKNOX1P55347 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PKNOX1P55347 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
PKNOX1P55347 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
PKNOX1P55347 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms