Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SERP1-208ENST00000491660 830 ntTSL 2 BASIC30.43■■■□□ 2.46
MSH6P52701 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
MSH6P52701 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
MSH6P52701 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
MSH6P52701 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
MSH6P52701 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
MSH6P52701 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
MSH6P52701 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
MSH6P52701 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC30.42■■■□□ 2.46
MSH6P52701 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
MSH6P52701 AC083880.1-201ENST00000608266 535 ntBASIC30.41■■■□□ 2.46
MSH6P52701 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC30.41■■■□□ 2.46
MSH6P52701 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
MSH6P52701 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
MSH6P52701 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
MSH6P52701 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC30.41■■■□□ 2.46
MSH6P52701 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC30.4■■■□□ 2.46
MSH6P52701 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
MSH6P52701 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
MSH6P52701 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
MSH6P52701 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC30.4■■■□□ 2.46
MSH6P52701 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC30.4■■■□□ 2.46
MSH6P52701 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC30.4■■■□□ 2.46
MSH6P52701 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
MSH6P52701 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC30.4■■■□□ 2.46
MSH6P52701 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
MSH6P52701 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
MSH6P52701 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC30.39■■■□□ 2.46
MSH6P52701 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
MSH6P52701 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
MSH6P52701 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC30.39■■■□□ 2.45
MSH6P52701 BET1L-204ENST00000410108 637 ntTSL 3 BASIC30.39■■■□□ 2.45
MSH6P52701 AC010141.2-201ENST00000452426 721 ntBASIC30.39■■■□□ 2.45
MSH6P52701 KRT18P20-201ENST00000548986 1279 ntBASIC30.39■■■□□ 2.45
MSH6P52701 AC142381.4-202ENST00000563973 229 ntBASIC30.39■■■□□ 2.45
MSH6P52701 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
MSH6P52701 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
MSH6P52701 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
MSH6P52701 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
MSH6P52701 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC30.38■■■□□ 2.45
MSH6P52701 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
MSH6P52701 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC30.37■■■□□ 2.45
MSH6P52701 AC068338.2-201ENST00000563278 1430 ntBASIC30.37■■■□□ 2.45
MSH6P52701 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
MSH6P52701 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
MSH6P52701 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC30.37■■■□□ 2.45
MSH6P52701 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC30.37■■■□□ 2.45
MSH6P52701 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC30.37■■■□□ 2.45
MSH6P52701 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC30.37■■■□□ 2.45
MSH6P52701 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC30.37■■■□□ 2.45
MSH6P52701 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
MSH6P52701 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
MSH6P52701 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC30.36■■■□□ 2.45
MSH6P52701 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC30.36■■■□□ 2.45
MSH6P52701 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
MSH6P52701 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC30.36■■■□□ 2.45
MSH6P52701 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC30.36■■■□□ 2.45
MSH6P52701 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC30.36■■■□□ 2.45
MSH6P52701 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC30.36■■■□□ 2.45
MSH6P52701 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC30.36■■■□□ 2.45
MSH6P52701 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
MSH6P52701 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC30.35■■■□□ 2.45
MSH6P52701 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC30.35■■■□□ 2.45
MSH6P52701 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC30.35■■■□□ 2.45
MSH6P52701 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
MSH6P52701 AC006058.3-201ENST00000606217 1069 ntBASIC30.35■■■□□ 2.45
MSH6P52701 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC30.35■■■□□ 2.45
MSH6P52701 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC30.35■■■□□ 2.45
MSH6P52701 AC135731.1-201ENST00000569415 2548 ntBASIC30.35■■■□□ 2.45
MSH6P52701 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
MSH6P52701 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
MSH6P52701 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
MSH6P52701 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
MSH6P52701 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
MSH6P52701 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
MSH6P52701 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
MSH6P52701 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
MSH6P52701 USP45-205ENST00000472914 1617 ntTSL 5 BASIC30.33■■■□□ 2.45
MSH6P52701 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
MSH6P52701 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
MSH6P52701 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
MSH6P52701 UNC93B4-201ENST00000505679 747 ntBASIC30.33■■■□□ 2.45
MSH6P52701 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC30.33■■■□□ 2.45
MSH6P52701 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC30.33■■■□□ 2.45
MSH6P52701 OR10C1-204ENST00000622521 1039 ntBASIC30.33■■■□□ 2.45
MSH6P52701 MYC-209ENST00000641252 345 ntBASIC30.33■■■□□ 2.45
MSH6P52701 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC30.33■■■□□ 2.45
MSH6P52701 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC30.33■■■□□ 2.45
MSH6P52701 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
MSH6P52701 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC30.33■■■□□ 2.45
MSH6P52701 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
MSH6P52701 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
MSH6P52701 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC30.32■■■□□ 2.44
MSH6P52701 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
MSH6P52701 BMP1-204ENST00000397814 836 ntTSL 4 BASIC30.32■■■□□ 2.44
MSH6P52701 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
MSH6P52701 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
MSH6P52701 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
MSH6P52701 GAS7-202ENST00000396115 929 ntTSL 5 BASIC30.31■■■□□ 2.44
MSH6P52701 AC128676.1-201ENST00000454392 318 ntBASIC30.31■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms