Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
MSX2P35548 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
MSX2P35548 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSX2P35548 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSX2P35548 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSX2P35548 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSX2P35548 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.65■□□□□ 0.9
MSX2P35548 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSX2P35548 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSX2P35548 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.65■□□□□ 0.9
MSX2P35548 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
MSX2P35548 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSX2P35548 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.65■□□□□ 0.9
MSX2P35548 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
MSX2P35548 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
MSX2P35548 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MSX2P35548 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSX2P35548 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSX2P35548 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSX2P35548 KRT18P24-201ENST00000344739 1156 ntBASIC20.64■□□□□ 0.89
MSX2P35548 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MSX2P35548 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSX2P35548 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSX2P35548 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.64■□□□□ 0.89
MSX2P35548 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSX2P35548 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MSX2P35548 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSX2P35548 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSX2P35548 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSX2P35548 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSX2P35548 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSX2P35548 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.63■□□□□ 0.89
MSX2P35548 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSX2P35548 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSX2P35548 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
MSX2P35548 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.63■□□□□ 0.89
MSX2P35548 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSX2P35548 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
MSX2P35548 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSX2P35548 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
MSX2P35548 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSX2P35548 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSX2P35548 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSX2P35548 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSX2P35548 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.62■□□□□ 0.89
MSX2P35548 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSX2P35548 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
MSX2P35548 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MSX2P35548 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSX2P35548 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
MSX2P35548 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.62■□□□□ 0.89
MSX2P35548 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSX2P35548 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.62■□□□□ 0.89
MSX2P35548 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSX2P35548 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.61■□□□□ 0.89
MSX2P35548 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSX2P35548 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.61■□□□□ 0.89
MSX2P35548 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSX2P35548 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSX2P35548 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSX2P35548 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
MSX2P35548 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.61■□□□□ 0.89
MSX2P35548 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.61■□□□□ 0.89
MSX2P35548 PVT1_1.1-201ENST00000615125 194 ntBASIC20.61■□□□□ 0.89
MSX2P35548 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSX2P35548 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSX2P35548 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSX2P35548 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSX2P35548 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.61■□□□□ 0.89
MSX2P35548 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.61■□□□□ 0.89
MSX2P35548 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSX2P35548 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSX2P35548 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSX2P35548 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSX2P35548 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MSX2P35548 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.6■□□□□ 0.89
MSX2P35548 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSX2P35548 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.6■□□□□ 0.89
MSX2P35548 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.6■□□□□ 0.89
MSX2P35548 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MSX2P35548 AL121603.2-201ENST00000557373 2117 ntBASIC20.6■□□□□ 0.89
MSX2P35548 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.6■□□□□ 0.89
MSX2P35548 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
MSX2P35548 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
MSX2P35548 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
MSX2P35548 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSX2P35548 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSX2P35548 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.59■□□□□ 0.89
MSX2P35548 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.59■□□□□ 0.89
MSX2P35548 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSX2P35548 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.59■□□□□ 0.89
MSX2P35548 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
MSX2P35548 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSX2P35548 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
MSX2P35548 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSX2P35548 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSX2P35548 RARRES2P2-201ENST00000394842 485 ntBASIC20.59■□□□□ 0.89
MSX2P35548 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSX2P35548 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSX2P35548 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms