Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC23.8■■□□□ 1.4
TPM1P09493 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TPM1P09493 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC23.8■■□□□ 1.4
TPM1P09493 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.79■■□□□ 1.4
TPM1P09493 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
TPM1P09493 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TPM1P09493 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
TPM1P09493 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
TPM1P09493 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
TPM1P09493 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
TPM1P09493 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
TPM1P09493 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
TPM1P09493 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
TPM1P09493 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TPM1P09493 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TPM1P09493 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
TPM1P09493 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.78■■□□□ 1.4
TPM1P09493 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TPM1P09493 KRT8P33-201ENST00000508125 1423 ntBASIC23.78■■□□□ 1.4
TPM1P09493 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.78■■□□□ 1.4
TPM1P09493 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
TPM1P09493 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
TPM1P09493 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TPM1P09493 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
TPM1P09493 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.78■■□□□ 1.4
TPM1P09493 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TPM1P09493 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TPM1P09493 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC23.78■■□□□ 1.4
TPM1P09493 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TPM1P09493 AC103834.1-201ENST00000520383 144 ntBASIC23.77■■□□□ 1.4
TPM1P09493 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.77■■□□□ 1.4
TPM1P09493 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.77■■□□□ 1.4
TPM1P09493 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
TPM1P09493 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TPM1P09493 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
TPM1P09493 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TPM1P09493 AC004687.1-201ENST00000579003 1625 ntBASIC23.77■■□□□ 1.4
TPM1P09493 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC23.76■■□□□ 1.39
TPM1P09493 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.76■■□□□ 1.39
TPM1P09493 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC23.76■■□□□ 1.39
TPM1P09493 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC23.76■■□□□ 1.39
TPM1P09493 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.76■■□□□ 1.39
TPM1P09493 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC23.76■■□□□ 1.39
TPM1P09493 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
TPM1P09493 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC23.76■■□□□ 1.39
TPM1P09493 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TPM1P09493 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC23.75■■□□□ 1.39
TPM1P09493 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC23.75■■□□□ 1.39
TPM1P09493 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.75■■□□□ 1.39
TPM1P09493 AL031848.2-201ENST00000607670 837 ntBASIC23.75■■□□□ 1.39
TPM1P09493 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
TPM1P09493 AC012354.3-201ENST00000623734 483 ntBASIC23.75■■□□□ 1.39
TPM1P09493 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
TPM1P09493 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.75■■□□□ 1.39
TPM1P09493 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
TPM1P09493 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
TPM1P09493 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.75■■□□□ 1.39
TPM1P09493 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TPM1P09493 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TPM1P09493 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TPM1P09493 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
TPM1P09493 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
TPM1P09493 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.74■■□□□ 1.39
TPM1P09493 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC23.74■■□□□ 1.39
TPM1P09493 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
TPM1P09493 CA15P2-201ENST00000611168 834 ntBASIC23.74■■□□□ 1.39
TPM1P09493 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
TPM1P09493 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TPM1P09493 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
TPM1P09493 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TPM1P09493 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC23.73■■□□□ 1.39
TPM1P09493 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
TPM1P09493 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC23.73■■□□□ 1.39
TPM1P09493 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TPM1P09493 AC244015.2-201ENST00000616358 1861 ntBASIC23.73■■□□□ 1.39
TPM1P09493 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
TPM1P09493 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
TPM1P09493 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TPM1P09493 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
TPM1P09493 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TPM1P09493 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TPM1P09493 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TPM1P09493 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
TPM1P09493 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
TPM1P09493 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
TPM1P09493 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
TPM1P09493 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.72■■□□□ 1.39
TPM1P09493 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TPM1P09493 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms