Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 AL137060.1-201ENST00000618151 2648 ntBASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 GUSBP5-201ENST00000418136 578 ntBASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 AL356740.2-201ENST00000601559 647 ntBASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 pRNA.6-201ENST00000610482 90 ntBASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 pRNA.5-201ENST00000612139 90 ntBASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 pRNA.11-201ENST00000618423 90 ntBASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 pRNA.13-201ENST00000619112 90 ntBASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CPSF4LA6NMK7 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 AC099791.2-201ENST00000605725 427 ntBASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 AC133637.1-201ENST00000624115 1537 ntBASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.95■□□□□ 0.78
CPSF4LA6NMK7 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 FAM99A-202ENST00000538190 1989 ntBASIC19.94■□□□□ 0.78
CPSF4LA6NMK7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4LA6NMK7 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4LA6NMK7 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.92■□□□□ 0.78
CPSF4LA6NMK7 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4LA6NMK7 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CPSF4LA6NMK7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.92■□□□□ 0.78
CPSF4LA6NMK7 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4LA6NMK7 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4LA6NMK7 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.92■□□□□ 0.78
CPSF4LA6NMK7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CPSF4LA6NMK7 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CPSF4LA6NMK7 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CPSF4LA6NMK7 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CPSF4LA6NMK7 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms