Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 SLC29A4P1-201ENST00000398760 971 ntBASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 GUSBP6-202ENST00000438529 1198 ntBASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 AC104187.1-201ENST00000607510 612 ntBASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PCDHGA1Q9Y5H4 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHGA1Q9Y5H4 AC005224.4-201ENST00000583262 1652 ntBASIC20.99■□□□□ 0.95
PCDHGA1Q9Y5H4 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PCDHGA1Q9Y5H4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.99■□□□□ 0.95
PCDHGA1Q9Y5H4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.99■□□□□ 0.95
PCDHGA1Q9Y5H4 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.99■□□□□ 0.95
PCDHGA1Q9Y5H4 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
PCDHGA1Q9Y5H4 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PCDHGA1Q9Y5H4 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.99■□□□□ 0.95
PCDHGA1Q9Y5H4 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PCDHGA1Q9Y5H4 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 AC079630.1-202ENST00000618127 1840 ntBASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.98■□□□□ 0.95
PCDHGA1Q9Y5H4 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHGA1Q9Y5H4 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHGA1Q9Y5H4 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHGA1Q9Y5H4 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHGA1Q9Y5H4 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHGA1Q9Y5H4 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDHGA1Q9Y5H4 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHGA1Q9Y5H4 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDHGA1Q9Y5H4 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
PCDHGA1Q9Y5H4 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDHGA1Q9Y5H4 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDHGA1Q9Y5H4 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 AC073210.2-201ENST00000430369 194 ntBASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHGA1Q9Y5H4 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 AC133041.1-202ENST00000642053 222 ntBASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDHGA1Q9Y5H4 AC142381.3-201ENST00000568208 1670 ntBASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 UBE2DNL-204ENST00000602536 740 ntBASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 MYCNOS-205ENST00000641950 531 ntBASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms