Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AL512631.2-201ENST00000604634 923 ntBASIC19.41■□□□□ 0.7
VSX1Q9NZR4 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VSX1Q9NZR4 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.4■□□□□ 0.7
VSX1Q9NZR4 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 SRD5A1P1-201ENST00000442297 786 ntBASIC19.4■□□□□ 0.7
VSX1Q9NZR4 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VSX1Q9NZR4 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VSX1Q9NZR4 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 AL356441.2-201ENST00000443009 864 ntBASIC19.39■□□□□ 0.69
VSX1Q9NZR4 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.39■□□□□ 0.69
VSX1Q9NZR4 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 MIR3181-201ENST00000578512 73 ntBASIC19.38■□□□□ 0.69
VSX1Q9NZR4 AC092171.4-201ENST00000609130 632 ntBASIC19.38■□□□□ 0.69
VSX1Q9NZR4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VSX1Q9NZR4 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VSX1Q9NZR4 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
VSX1Q9NZR4 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VSX1Q9NZR4 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VSX1Q9NZR4 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VSX1Q9NZR4 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VSX1Q9NZR4 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VSX1Q9NZR4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.36■□□□□ 0.69
VSX1Q9NZR4 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.36■□□□□ 0.69
VSX1Q9NZR4 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VSX1Q9NZR4 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VSX1Q9NZR4 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 OR2I1P-207ENST00000453522 948 ntBASIC19.35■□□□□ 0.69
VSX1Q9NZR4 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VSX1Q9NZR4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms