Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 AC137630.3-201ENST00000607245 391 ntBASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP1AQ9HD42 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP1AQ9HD42 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 C11orf96-202ENST00000528572 1834 ntBASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP1AQ9HD42 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
CHMP1AQ9HD42 AC092053.2-201ENST00000640557 1818 ntBASIC18.58■□□□□ 0.57
CHMP1AQ9HD42 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
CHMP1AQ9HD42 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHMP1AQ9HD42 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHMP1AQ9HD42 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 CLTA-210ENST00000540080 989 ntTSL 2 BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 AL121603.2-201ENST00000557373 2117 ntBASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.58■□□□□ 0.56
CHMP1AQ9HD42 LINC01529-204ENST00000636474 1715 ntBASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 BX664725.1-201ENST00000438252 379 ntBASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
CHMP1AQ9HD42 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms