Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PIF1Q9H611 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PIF1Q9H611 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PIF1Q9H611 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.7■□□□□ 0.9
PIF1Q9H611 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PIF1Q9H611 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PIF1Q9H611 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PIF1Q9H611 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
PIF1Q9H611 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
PIF1Q9H611 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.7■□□□□ 0.9
PIF1Q9H611 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PIF1Q9H611 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
PIF1Q9H611 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PIF1Q9H611 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PIF1Q9H611 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PIF1Q9H611 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PIF1Q9H611 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.69■□□□□ 0.9
PIF1Q9H611 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.69■□□□□ 0.9
PIF1Q9H611 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PIF1Q9H611 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.69■□□□□ 0.9
PIF1Q9H611 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PIF1Q9H611 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.69■□□□□ 0.9
PIF1Q9H611 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.68■□□□□ 0.9
PIF1Q9H611 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PIF1Q9H611 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.68■□□□□ 0.9
PIF1Q9H611 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.68■□□□□ 0.9
PIF1Q9H611 AC137630.3-201ENST00000607245 391 ntBASIC20.68■□□□□ 0.9
PIF1Q9H611 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.68■□□□□ 0.9
PIF1Q9H611 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PIF1Q9H611 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PIF1Q9H611 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PIF1Q9H611 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PIF1Q9H611 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PIF1Q9H611 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PIF1Q9H611 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PIF1Q9H611 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PIF1Q9H611 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.67■□□□□ 0.9
PIF1Q9H611 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.67■□□□□ 0.9
PIF1Q9H611 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PIF1Q9H611 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PIF1Q9H611 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PIF1Q9H611 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.67■□□□□ 0.9
PIF1Q9H611 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PIF1Q9H611 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PIF1Q9H611 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PIF1Q9H611 AC005703.6-201ENST00000623265 1329 ntBASIC20.66■□□□□ 0.9
PIF1Q9H611 FP325331.1-202ENST00000623531 1380 ntBASIC20.66■□□□□ 0.9
PIF1Q9H611 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.66■□□□□ 0.9
PIF1Q9H611 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PIF1Q9H611 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PIF1Q9H611 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.66■□□□□ 0.9
PIF1Q9H611 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PIF1Q9H611 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
PIF1Q9H611 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PIF1Q9H611 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
PIF1Q9H611 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PIF1Q9H611 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PIF1Q9H611 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
PIF1Q9H611 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
PIF1Q9H611 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PIF1Q9H611 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PIF1Q9H611 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PIF1Q9H611 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.65■□□□□ 0.9
PIF1Q9H611 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.65■□□□□ 0.9
PIF1Q9H611 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.65■□□□□ 0.9
PIF1Q9H611 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PIF1Q9H611 AC004687.1-201ENST00000579003 1625 ntBASIC20.64■□□□□ 0.9
PIF1Q9H611 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PIF1Q9H611 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.64■□□□□ 0.89
PIF1Q9H611 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.64■□□□□ 0.89
PIF1Q9H611 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.64■□□□□ 0.89
PIF1Q9H611 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
PIF1Q9H611 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PIF1Q9H611 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PIF1Q9H611 Z92544.1-202ENST00000571933 1220 ntBASIC20.64■□□□□ 0.89
PIF1Q9H611 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PIF1Q9H611 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PIF1Q9H611 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PIF1Q9H611 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.64■□□□□ 0.89
PIF1Q9H611 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.64■□□□□ 0.89
PIF1Q9H611 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.64■□□□□ 0.89
PIF1Q9H611 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
PIF1Q9H611 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
PIF1Q9H611 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.63■□□□□ 0.89
PIF1Q9H611 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
PIF1Q9H611 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PIF1Q9H611 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PIF1Q9H611 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PIF1Q9H611 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PIF1Q9H611 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
PIF1Q9H611 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.63■□□□□ 0.89
PIF1Q9H611 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PIF1Q9H611 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PIF1Q9H611 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PIF1Q9H611 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PIF1Q9H611 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.62■□□□□ 0.89
PIF1Q9H611 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
PIF1Q9H611 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PIF1Q9H611 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PIF1Q9H611 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms