Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
USP54Q70EL1 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC29.42■■■□□ 2.3
USP54Q70EL1 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC29.42■■■□□ 2.3
USP54Q70EL1 TFG-210ENST00000620299 1289 ntTSL 5 BASIC29.42■■■□□ 2.3
USP54Q70EL1 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
USP54Q70EL1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
USP54Q70EL1 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
USP54Q70EL1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
USP54Q70EL1 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
USP54Q70EL1 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
USP54Q70EL1 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
USP54Q70EL1 MAP2K4P1-201ENST00000438453 1195 ntBASIC29.41■■■□□ 2.3
USP54Q70EL1 SPI1-203ENST00000533030 661 ntTSL 2 BASIC29.41■■■□□ 2.3
USP54Q70EL1 TESC-206ENST00000541210 936 ntTSL 3 BASIC29.41■■■□□ 2.3
USP54Q70EL1 SLC7A5P2-201ENST00000553010 536 ntBASIC29.41■■■□□ 2.3
USP54Q70EL1 LINC01960-201ENST00000563759 1884 ntBASIC29.41■■■□□ 2.3
USP54Q70EL1 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
USP54Q70EL1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC29.4■■■□□ 2.3
USP54Q70EL1 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC29.4■■■□□ 2.3
USP54Q70EL1 ANOS2P-203ENST00000472227 1816 ntBASIC29.4■■■□□ 2.3
USP54Q70EL1 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC29.4■■■□□ 2.3
USP54Q70EL1 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
USP54Q70EL1 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
USP54Q70EL1 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC29.4■■■□□ 2.3
USP54Q70EL1 METTL26-203ENST00000397664 604 ntTSL 2 BASIC29.4■■■□□ 2.3
USP54Q70EL1 AC006970.2-201ENST00000450065 779 ntBASIC29.4■■■□□ 2.3
USP54Q70EL1 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC29.4■■■□□ 2.3
USP54Q70EL1 GAMT-205ENST00000640762 751 ntTSL 5 BASIC29.4■■■□□ 2.3
USP54Q70EL1 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
USP54Q70EL1 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC29.39■■■□□ 2.3
USP54Q70EL1 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
USP54Q70EL1 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC29.39■■■□□ 2.29
USP54Q70EL1 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
USP54Q70EL1 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
USP54Q70EL1 AC055733.4-201ENST00000638462 1354 ntBASIC29.38■■■□□ 2.29
USP54Q70EL1 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
USP54Q70EL1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC29.38■■■□□ 2.29
USP54Q70EL1 DUX4L16-201ENST00000555130 1264 ntBASIC29.38■■■□□ 2.29
USP54Q70EL1 MYCNOS-205ENST00000641950 531 ntBASIC29.38■■■□□ 2.29
USP54Q70EL1 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC29.38■■■□□ 2.29
USP54Q70EL1 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
USP54Q70EL1 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
USP54Q70EL1 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC29.37■■■□□ 2.29
USP54Q70EL1 AC011767.1-201ENST00000617410 1153 ntBASIC29.37■■■□□ 2.29
USP54Q70EL1 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC29.37■■■□□ 2.29
USP54Q70EL1 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC29.37■■■□□ 2.29
USP54Q70EL1 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC29.37■■■□□ 2.29
USP54Q70EL1 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
USP54Q70EL1 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
USP54Q70EL1 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC29.37■■■□□ 2.29
USP54Q70EL1 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC29.37■■■□□ 2.29
USP54Q70EL1 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC29.37■■■□□ 2.29
USP54Q70EL1 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC29.37■■■□□ 2.29
USP54Q70EL1 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC29.37■■■□□ 2.29
USP54Q70EL1 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC29.37■■■□□ 2.29
USP54Q70EL1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC29.37■■■□□ 2.29
USP54Q70EL1 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC29.36■■■□□ 2.29
USP54Q70EL1 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
USP54Q70EL1 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC29.36■■■□□ 2.29
USP54Q70EL1 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
USP54Q70EL1 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
USP54Q70EL1 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC29.36■■■□□ 2.29
USP54Q70EL1 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC29.36■■■□□ 2.29
USP54Q70EL1 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC29.36■■■□□ 2.29
USP54Q70EL1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
USP54Q70EL1 ESRRAP2-201ENST00000418437 1549 ntBASIC29.36■■■□□ 2.29
USP54Q70EL1 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC29.36■■■□□ 2.29
USP54Q70EL1 PXK-203ENST00000383715 1756 ntTSL 5 BASIC29.36■■■□□ 2.29
USP54Q70EL1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC29.35■■■□□ 2.29
USP54Q70EL1 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
USP54Q70EL1 AL355802.2-201ENST00000402069 882 ntBASIC29.35■■■□□ 2.29
USP54Q70EL1 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
USP54Q70EL1 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
USP54Q70EL1 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC29.35■■■□□ 2.29
USP54Q70EL1 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
USP54Q70EL1 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
USP54Q70EL1 CNN2P6-201ENST00000439038 900 ntBASIC29.34■■■□□ 2.29
USP54Q70EL1 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC29.34■■■□□ 2.29
USP54Q70EL1 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC29.34■■■□□ 2.29
USP54Q70EL1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC29.34■■■□□ 2.29
USP54Q70EL1 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC29.34■■■□□ 2.29
USP54Q70EL1 DUSP8P5-201ENST00000422884 1815 ntBASIC29.34■■■□□ 2.29
USP54Q70EL1 ABHD17AP1-201ENST00000358206 933 ntBASIC29.34■■■□□ 2.29
USP54Q70EL1 AC010141.2-201ENST00000452426 721 ntBASIC29.34■■■□□ 2.29
USP54Q70EL1 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC29.34■■■□□ 2.29
USP54Q70EL1 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC29.34■■■□□ 2.29
USP54Q70EL1 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC29.34■■■□□ 2.29
USP54Q70EL1 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
USP54Q70EL1 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USP54Q70EL1 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USP54Q70EL1 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
USP54Q70EL1 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USP54Q70EL1 METTL15-202ENST00000403099 795 ntTSL 5 BASIC29.33■■■□□ 2.29
USP54Q70EL1 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC29.33■■■□□ 2.29
USP54Q70EL1 AC142086.2-201ENST00000569753 217 ntBASIC29.33■■■□□ 2.29
USP54Q70EL1 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC29.33■■■□□ 2.29
USP54Q70EL1 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC29.33■■■□□ 2.29
USP54Q70EL1 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
USP54Q70EL1 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC29.33■■■□□ 2.29
USP54Q70EL1 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms