Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 AL121832.2-201ENST00000610979 668 ntBASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 ITM2C-210ENST00000620962 501 ntBASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 SMUG1P1-201ENST00000590640 811 ntBASIC18.04■□□□□ 0.48
CSPG4Q6UVK1 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 AC004687.1-201ENST00000579003 1625 ntBASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 AC104187.1-201ENST00000607510 612 ntBASIC18.03■□□□□ 0.48
CSPG4Q6UVK1 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.02■□□□□ 0.48
CSPG4Q6UVK1 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.02■□□□□ 0.47
CSPG4Q6UVK1 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CSPG4Q6UVK1 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 AC231657.2-201ENST00000624556 255 ntBASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 UBE2DNL-204ENST00000602536 740 ntBASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSPG4Q6UVK1 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18■□□□□ 0.47
CSPG4Q6UVK1 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CSPG4Q6UVK1 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18■□□□□ 0.47
CSPG4Q6UVK1 KRT87P-202ENST00000534226 1464 ntBASIC18■□□□□ 0.47
CSPG4Q6UVK1 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18■□□□□ 0.47
CSPG4Q6UVK1 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSPG4Q6UVK1 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CSPG4Q6UVK1 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18■□□□□ 0.47
CSPG4Q6UVK1 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSPG4Q6UVK1 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18■□□□□ 0.47
CSPG4Q6UVK1 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18■□□□□ 0.47
CSPG4Q6UVK1 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18■□□□□ 0.47
CSPG4Q6UVK1 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18■□□□□ 0.47
CSPG4Q6UVK1 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CSPG4Q6UVK1 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18■□□□□ 0.47
CSPG4Q6UVK1 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSPG4Q6UVK1 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC17.99■□□□□ 0.47
CSPG4Q6UVK1 AC004812.2-201ENST00000611079 2094 ntBASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms