Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.69■□□□□ 0.9
RORAP35398 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.69■□□□□ 0.9
RORAP35398 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
RORAP35398 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.68■□□□□ 0.9
RORAP35398 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.68■□□□□ 0.9
RORAP35398 NTF6G-201ENST00000591094 616 ntBASIC20.68■□□□□ 0.9
RORAP35398 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
RORAP35398 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
RORAP35398 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RORAP35398 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RORAP35398 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RORAP35398 DUSP8P3-201ENST00000399571 1760 ntBASIC20.67■□□□□ 0.9
RORAP35398 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RORAP35398 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RORAP35398 DUSP8P5-201ENST00000422884 1815 ntBASIC20.67■□□□□ 0.9
RORAP35398 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.67■□□□□ 0.9
RORAP35398 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RORAP35398 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RORAP35398 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.67■□□□□ 0.9
RORAP35398 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.67■□□□□ 0.9
RORAP35398 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RORAP35398 SMUG1P1-201ENST00000590640 811 ntBASIC20.67■□□□□ 0.9
RORAP35398 AC092437.1-201ENST00000624794 1048 ntBASIC20.67■□□□□ 0.9
RORAP35398 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RORAP35398 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RORAP35398 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.67■□□□□ 0.9
RORAP35398 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.67■□□□□ 0.9
RORAP35398 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RORAP35398 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
RORAP35398 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RORAP35398 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RORAP35398 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RORAP35398 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.66■□□□□ 0.9
RORAP35398 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.66■□□□□ 0.9
RORAP35398 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
RORAP35398 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.66■□□□□ 0.9
RORAP35398 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
RORAP35398 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RORAP35398 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.66■□□□□ 0.9
RORAP35398 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RORAP35398 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RORAP35398 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
RORAP35398 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RORAP35398 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
RORAP35398 OXCT2P1-201ENST00000447263 1535 ntBASIC20.65■□□□□ 0.9
RORAP35398 BX005040.4-201ENST00000637145 1518 ntBASIC20.65■□□□□ 0.9
RORAP35398 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RORAP35398 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RORAP35398 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RORAP35398 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.65■□□□□ 0.9
RORAP35398 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.65■□□□□ 0.9
RORAP35398 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RORAP35398 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.65■□□□□ 0.9
RORAP35398 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
RORAP35398 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.64■□□□□ 0.89
RORAP35398 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RORAP35398 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
RORAP35398 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.64■□□□□ 0.89
RORAP35398 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.64■□□□□ 0.89
RORAP35398 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RORAP35398 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
RORAP35398 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
RORAP35398 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RORAP35398 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RORAP35398 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RORAP35398 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
RORAP35398 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RORAP35398 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RORAP35398 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.63■□□□□ 0.89
RORAP35398 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.63■□□□□ 0.89
RORAP35398 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.63■□□□□ 0.89
RORAP35398 AL137784.2-201ENST00000607332 1000 ntBASIC20.63■□□□□ 0.89
RORAP35398 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.63■□□□□ 0.89
RORAP35398 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.63■□□□□ 0.89
RORAP35398 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RORAP35398 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RORAP35398 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
RORAP35398 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RORAP35398 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RORAP35398 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RORAP35398 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
RORAP35398 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.62■□□□□ 0.89
RORAP35398 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RORAP35398 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RORAP35398 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
RORAP35398 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.62■□□□□ 0.89
RORAP35398 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms