Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HLA-DMBP28068 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DMBP28068 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC16.53■□□□□ 0.24
HLA-DMBP28068 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
HLA-DMBP28068 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
HLA-DMBP28068 VGF-203ENST00000611537 1622 ntTSL 5 BASIC16.52■□□□□ 0.23
HLA-DMBP28068 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 SRR-208ENST00000576848 588 ntTSL 4 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 TRIR-202ENST00000588213 841 ntTSL 3 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 AL356740.2-201ENST00000601559 647 ntBASIC16.5■□□□□ 0.23
HLA-DMBP28068 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 AC010542.4-201ENST00000563151 1910 ntBASIC16.49■□□□□ 0.23
HLA-DMBP28068 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 RPP21-222ENST00000433076 577 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 AK3-203ENST00000447596 705 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 AL117332.1-201ENST00000622628 974 ntBASIC16.48■□□□□ 0.23
HLA-DMBP28068 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 FAM99A-202ENST00000538190 1989 ntBASIC16.47■□□□□ 0.23
HLA-DMBP28068 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DMBP28068 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DMBP28068 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms