Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HLA-DMBP28068 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DMBP28068 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC16.53■□□□□ 0.24
HLA-DMBP28068 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
HLA-DMBP28068 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HLA-DMBP28068 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
HLA-DMBP28068 VGF-203ENST00000611537 1622 ntTSL 5 BASIC16.52■□□□□ 0.23
HLA-DMBP28068 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 SRR-208ENST00000576848 588 ntTSL 4 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 TRIR-202ENST00000588213 841 ntTSL 3 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
HLA-DMBP28068 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
HLA-DMBP28068 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 AL356740.2-201ENST00000601559 647 ntBASIC16.5■□□□□ 0.23
HLA-DMBP28068 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HLA-DMBP28068 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC16.5■□□□□ 0.23
HLA-DMBP28068 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 AC010542.4-201ENST00000563151 1910 ntBASIC16.49■□□□□ 0.23
HLA-DMBP28068 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DMBP28068 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC16.49■□□□□ 0.23
HLA-DMBP28068 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 RPP21-222ENST00000433076 577 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 AK3-203ENST00000447596 705 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 AL117332.1-201ENST00000622628 974 ntBASIC16.48■□□□□ 0.23
HLA-DMBP28068 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DMBP28068 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DMBP28068 FAM99A-202ENST00000538190 1989 ntBASIC16.47■□□□□ 0.23
HLA-DMBP28068 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DMBP28068 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DMBP28068 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms