Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
COL8A1P27658 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL8A1P27658 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL8A1P27658 CNN2P6-201ENST00000439038 900 ntBASIC19.07■□□□□ 0.64
COL8A1P27658 AC142381.4-202ENST00000563973 229 ntBASIC19.07■□□□□ 0.64
COL8A1P27658 AC133552.2-202ENST00000575694 574 ntBASIC19.07■□□□□ 0.64
COL8A1P27658 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.07■□□□□ 0.64
COL8A1P27658 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL8A1P27658 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL8A1P27658 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL8A1P27658 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL8A1P27658 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL8A1P27658 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.06■□□□□ 0.64
COL8A1P27658 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.06■□□□□ 0.64
COL8A1P27658 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.06■□□□□ 0.64
COL8A1P27658 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
COL8A1P27658 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
COL8A1P27658 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL8A1P27658 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
COL8A1P27658 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
COL8A1P27658 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL8A1P27658 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL8A1P27658 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL8A1P27658 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.06■□□□□ 0.64
COL8A1P27658 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.06■□□□□ 0.64
COL8A1P27658 MYCNOS-205ENST00000641950 531 ntBASIC19.06■□□□□ 0.64
COL8A1P27658 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC19.06■□□□□ 0.64
COL8A1P27658 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC19.06■□□□□ 0.64
COL8A1P27658 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL8A1P27658 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL8A1P27658 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL8A1P27658 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.05■□□□□ 0.64
COL8A1P27658 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL8A1P27658 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL8A1P27658 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL8A1P27658 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.05■□□□□ 0.64
COL8A1P27658 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL8A1P27658 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
COL8A1P27658 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL8A1P27658 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL8A1P27658 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
COL8A1P27658 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.05■□□□□ 0.64
COL8A1P27658 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL8A1P27658 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
COL8A1P27658 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL8A1P27658 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL8A1P27658 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL8A1P27658 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL8A1P27658 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL8A1P27658 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL8A1P27658 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL8A1P27658 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL8A1P27658 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL8A1P27658 ESRRAP1-201ENST00000400596 1257 ntBASIC19.04■□□□□ 0.64
COL8A1P27658 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.04■□□□□ 0.64
COL8A1P27658 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL8A1P27658 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.04■□□□□ 0.64
COL8A1P27658 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.04■□□□□ 0.64
COL8A1P27658 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL8A1P27658 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL8A1P27658 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
COL8A1P27658 LINC01529-204ENST00000636474 1715 ntBASIC19.04■□□□□ 0.64
COL8A1P27658 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL8A1P27658 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL8A1P27658 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL8A1P27658 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL8A1P27658 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL8A1P27658 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL8A1P27658 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL8A1P27658 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.03■□□□□ 0.64
COL8A1P27658 MIPEPP3-201ENST00000412105 444 ntBASIC19.03■□□□□ 0.64
COL8A1P27658 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.03■□□□□ 0.64
COL8A1P27658 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.03■□□□□ 0.64
COL8A1P27658 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.03■□□□□ 0.64
COL8A1P27658 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.03■□□□□ 0.64
COL8A1P27658 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL8A1P27658 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL8A1P27658 AC092803.2-201ENST00000564287 1899 ntBASIC19.03■□□□□ 0.64
COL8A1P27658 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.02■□□□□ 0.64
COL8A1P27658 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL8A1P27658 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.02■□□□□ 0.64
COL8A1P27658 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.02■□□□□ 0.64
COL8A1P27658 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.02■□□□□ 0.64
COL8A1P27658 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL8A1P27658 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL8A1P27658 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
COL8A1P27658 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.02■□□□□ 0.63
COL8A1P27658 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL8A1P27658 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL8A1P27658 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.01■□□□□ 0.63
COL8A1P27658 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.01■□□□□ 0.63
COL8A1P27658 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL8A1P27658 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL8A1P27658 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19.01■□□□□ 0.63
COL8A1P27658 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL8A1P27658 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL8A1P27658 ECEL1P3-201ENST00000427961 737 ntBASIC19.01■□□□□ 0.63
COL8A1P27658 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.01■□□□□ 0.63
COL8A1P27658 AC006058.3-201ENST00000606217 1069 ntBASIC19.01■□□□□ 0.63
COL8A1P27658 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms