Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A1P20908 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A1P20908 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL5A1P20908 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.13■□□□□ 0.97
COL5A1P20908 AL121832.2-201ENST00000610979 668 ntBASIC21.13■□□□□ 0.97
COL5A1P20908 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.13■□□□□ 0.97
COL5A1P20908 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A1P20908 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A1P20908 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A1P20908 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A1P20908 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.12■□□□□ 0.97
COL5A1P20908 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.12■□□□□ 0.97
COL5A1P20908 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.12■□□□□ 0.97
COL5A1P20908 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
COL5A1P20908 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.12■□□□□ 0.97
COL5A1P20908 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A1P20908 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A1P20908 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A1P20908 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.11■□□□□ 0.97
COL5A1P20908 CD99P1-205ENST00000527459 561 ntBASIC21.11■□□□□ 0.97
COL5A1P20908 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.11■□□□□ 0.97
COL5A1P20908 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.11■□□□□ 0.97
COL5A1P20908 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.11■□□□□ 0.97
COL5A1P20908 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A1P20908 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A1P20908 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A1P20908 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A1P20908 KRT18P6-201ENST00000555540 1265 ntBASIC21.11■□□□□ 0.97
COL5A1P20908 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.11■□□□□ 0.97
COL5A1P20908 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.11■□□□□ 0.97
COL5A1P20908 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A1P20908 TMEM191A-211ENST00000637163 1067 ntBASIC21.11■□□□□ 0.97
COL5A1P20908 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A1P20908 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.1■□□□□ 0.97
COL5A1P20908 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A1P20908 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A1P20908 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A1P20908 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A1P20908 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A1P20908 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A1P20908 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.09■□□□□ 0.97
COL5A1P20908 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A1P20908 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
COL5A1P20908 MYCNOS-205ENST00000641950 531 ntBASIC21.09■□□□□ 0.97
COL5A1P20908 AC009237.3-201ENST00000393279 1427 ntBASIC21.09■□□□□ 0.97
COL5A1P20908 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A1P20908 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A1P20908 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A1P20908 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A1P20908 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A1P20908 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A1P20908 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A1P20908 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A1P20908 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.08■□□□□ 0.97
COL5A1P20908 TSPY6P-201ENST00000448518 926 ntBASIC21.08■□□□□ 0.97
COL5A1P20908 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A1P20908 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A1P20908 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A1P20908 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
COL5A1P20908 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A1P20908 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.08■□□□□ 0.97
COL5A1P20908 OXCT2P1-201ENST00000447263 1535 ntBASIC21.08■□□□□ 0.97
COL5A1P20908 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL5A1P20908 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL5A1P20908 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL5A1P20908 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL5A1P20908 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.08■□□□□ 0.96
COL5A1P20908 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL5A1P20908 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.08■□□□□ 0.96
COL5A1P20908 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A1P20908 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
COL5A1P20908 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A1P20908 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.07■□□□□ 0.96
COL5A1P20908 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.07■□□□□ 0.96
COL5A1P20908 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A1P20908 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A1P20908 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL5A1P20908 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A1P20908 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
COL5A1P20908 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A1P20908 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A1P20908 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.06■□□□□ 0.96
COL5A1P20908 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A1P20908 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.06■□□□□ 0.96
COL5A1P20908 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.06■□□□□ 0.96
COL5A1P20908 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.06■□□□□ 0.96
COL5A1P20908 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A1P20908 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A1P20908 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.06■□□□□ 0.96
COL5A1P20908 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
COL5A1P20908 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
COL5A1P20908 CNN2P6-201ENST00000439038 900 ntBASIC21.06■□□□□ 0.96
COL5A1P20908 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A1P20908 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.06■□□□□ 0.96
COL5A1P20908 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A1P20908 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.06■□□□□ 0.96
COL5A1P20908 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL5A1P20908 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A1P20908 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A1P20908 SLC29A4P1-201ENST00000398760 971 ntBASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms