Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCNAP12004 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCNAP12004 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
PCNAP12004 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCNAP12004 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCNAP12004 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.12■□□□□ 0.97
PCNAP12004 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCNAP12004 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCNAP12004 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCNAP12004 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.12■□□□□ 0.97
PCNAP12004 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCNAP12004 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.12■□□□□ 0.97
PCNAP12004 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.12■□□□□ 0.97
PCNAP12004 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
PCNAP12004 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCNAP12004 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCNAP12004 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCNAP12004 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
PCNAP12004 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.12■□□□□ 0.97
PCNAP12004 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PCNAP12004 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PCNAP12004 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PCNAP12004 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCNAP12004 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
PCNAP12004 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCNAP12004 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCNAP12004 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.11■□□□□ 0.97
PCNAP12004 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.11■□□□□ 0.97
PCNAP12004 MIR3181-201ENST00000578512 73 ntBASIC21.11■□□□□ 0.97
PCNAP12004 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
PCNAP12004 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.11■□□□□ 0.97
PCNAP12004 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PCNAP12004 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PCNAP12004 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PCNAP12004 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCNAP12004 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCNAP12004 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCNAP12004 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCNAP12004 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCNAP12004 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.1■□□□□ 0.97
PCNAP12004 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCNAP12004 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCNAP12004 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PCNAP12004 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
PCNAP12004 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
PCNAP12004 AC242852.2-201ENST00000615738 1807 ntBASIC21.09■□□□□ 0.97
PCNAP12004 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PCNAP12004 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCNAP12004 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCNAP12004 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PCNAP12004 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
PCNAP12004 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.09■□□□□ 0.97
PCNAP12004 AC137767.1-201ENST00000602918 1920 ntBASIC21.09■□□□□ 0.97
PCNAP12004 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.09■□□□□ 0.97
PCNAP12004 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
PCNAP12004 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCNAP12004 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCNAP12004 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCNAP12004 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
PCNAP12004 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCNAP12004 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
PCNAP12004 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCNAP12004 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCNAP12004 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
PCNAP12004 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCNAP12004 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCNAP12004 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.08■□□□□ 0.97
PCNAP12004 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCNAP12004 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
PCNAP12004 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
PCNAP12004 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCNAP12004 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCNAP12004 AL136116.3-201ENST00000402907 1138 ntBASIC21.08■□□□□ 0.97
PCNAP12004 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.08■□□□□ 0.97
PCNAP12004 AC080038.3-201ENST00000623346 1952 ntBASIC21.08■□□□□ 0.96
PCNAP12004 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCNAP12004 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
PCNAP12004 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PCNAP12004 SYT6-210ENST00000641643 1587 ntBASIC21.07■□□□□ 0.96
PCNAP12004 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.07■□□□□ 0.96
PCNAP12004 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCNAP12004 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PCNAP12004 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCNAP12004 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.07■□□□□ 0.96
PCNAP12004 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.07■□□□□ 0.96
PCNAP12004 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PCNAP12004 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCNAP12004 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.07■□□□□ 0.96
PCNAP12004 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCNAP12004 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCNAP12004 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCNAP12004 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
PCNAP12004 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCNAP12004 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.06■□□□□ 0.96
PCNAP12004 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
PCNAP12004 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.06■□□□□ 0.96
PCNAP12004 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCNAP12004 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCNAP12004 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.06■□□□□ 0.96
PCNAP12004 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms