Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
TPM1P09493 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
TPM1P09493 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC23.88■■□□□ 1.41
TPM1P09493 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
TPM1P09493 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
TPM1P09493 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
TPM1P09493 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
TPM1P09493 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.87■■□□□ 1.41
TPM1P09493 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
TPM1P09493 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.87■■□□□ 1.41
TPM1P09493 AL121603.2-201ENST00000557373 2117 ntBASIC23.87■■□□□ 1.41
TPM1P09493 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
TPM1P09493 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
TPM1P09493 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
TPM1P09493 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TPM1P09493 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
TPM1P09493 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC23.86■■□□□ 1.41
TPM1P09493 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
TPM1P09493 YBX1P4-201ENST00000392794 808 ntBASIC23.86■■□□□ 1.41
TPM1P09493 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.86■■□□□ 1.41
TPM1P09493 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.86■■□□□ 1.41
TPM1P09493 MIR6722-201ENST00000617286 78 ntBASIC23.86■■□□□ 1.41
TPM1P09493 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TPM1P09493 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
TPM1P09493 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TPM1P09493 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
TPM1P09493 FAM99A-202ENST00000538190 1989 ntBASIC23.85■■□□□ 1.41
TPM1P09493 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
TPM1P09493 AC010542.4-201ENST00000563151 1910 ntBASIC23.85■■□□□ 1.41
TPM1P09493 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.85■■□□□ 1.41
TPM1P09493 DUX4L4-201ENST00000566884 1269 ntBASIC23.85■■□□□ 1.41
TPM1P09493 AC137630.3-201ENST00000607245 391 ntBASIC23.85■■□□□ 1.41
TPM1P09493 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.85■■□□□ 1.41
TPM1P09493 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TPM1P09493 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TPM1P09493 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TPM1P09493 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TPM1P09493 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
TPM1P09493 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.84■■□□□ 1.41
TPM1P09493 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
TPM1P09493 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.84■■□□□ 1.41
TPM1P09493 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.84■■□□□ 1.41
TPM1P09493 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
TPM1P09493 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.84■■□□□ 1.41
TPM1P09493 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.84■■□□□ 1.41
TPM1P09493 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
TPM1P09493 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
TPM1P09493 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
TPM1P09493 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TPM1P09493 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
TPM1P09493 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.83■■□□□ 1.41
TPM1P09493 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
TPM1P09493 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.83■■□□□ 1.41
TPM1P09493 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
TPM1P09493 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.83■■□□□ 1.41
TPM1P09493 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.83■■□□□ 1.41
TPM1P09493 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC23.83■■□□□ 1.41
TPM1P09493 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.83■■□□□ 1.41
TPM1P09493 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TPM1P09493 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.82■■□□□ 1.4
TPM1P09493 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
TPM1P09493 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TPM1P09493 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TPM1P09493 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.82■■□□□ 1.4
TPM1P09493 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
TPM1P09493 AC026310.3-201ENST00000625186 2373 ntBASIC23.82■■□□□ 1.4
TPM1P09493 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TPM1P09493 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
TPM1P09493 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TPM1P09493 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TPM1P09493 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.81■■□□□ 1.4
TPM1P09493 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
TPM1P09493 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TPM1P09493 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.81■■□□□ 1.4
TPM1P09493 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC23.81■■□□□ 1.4
TPM1P09493 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TPM1P09493 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TPM1P09493 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
TPM1P09493 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
TPM1P09493 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC23.81■■□□□ 1.4
TPM1P09493 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TPM1P09493 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TPM1P09493 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
TPM1P09493 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC23.8■■□□□ 1.4
TPM1P09493 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TPM1P09493 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TPM1P09493 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC23.8■■□□□ 1.4
TPM1P09493 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.8■■□□□ 1.4
TPM1P09493 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TPM1P09493 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TPM1P09493 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.8■■□□□ 1.4
TPM1P09493 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TPM1P09493 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.8■■□□□ 1.4
TPM1P09493 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.8■■□□□ 1.4
TPM1P09493 AC103724.3-201ENST00000564481 992 ntBASIC23.8■■□□□ 1.4
TPM1P09493 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
TPM1P09493 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC23.8■■□□□ 1.4
TPM1P09493 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC23.8■■□□□ 1.4
TPM1P09493 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
TPM1P09493 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms