Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC3O15379 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.16■□□□□ 0.98
HDAC3O15379 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC3O15379 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HDAC3O15379 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC3O15379 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC3O15379 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.15■□□□□ 0.98
HDAC3O15379 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC3O15379 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.15■□□□□ 0.98
HDAC3O15379 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC3O15379 AC021242.3-201ENST00000607598 1377 ntBASIC21.15■□□□□ 0.98
HDAC3O15379 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
HDAC3O15379 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC3O15379 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC3O15379 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.15■□□□□ 0.98
HDAC3O15379 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.15■□□□□ 0.98
HDAC3O15379 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
HDAC3O15379 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HDAC3O15379 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC3O15379 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
HDAC3O15379 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.15■□□□□ 0.98
HDAC3O15379 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.15■□□□□ 0.98
HDAC3O15379 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.15■□□□□ 0.98
HDAC3O15379 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HDAC3O15379 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
HDAC3O15379 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HDAC3O15379 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.98
HDAC3O15379 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.14■□□□□ 0.97
HDAC3O15379 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HDAC3O15379 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
HDAC3O15379 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDAC3O15379 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDAC3O15379 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
HDAC3O15379 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.14■□□□□ 0.97
HDAC3O15379 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDAC3O15379 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
HDAC3O15379 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDAC3O15379 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDAC3O15379 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.14■□□□□ 0.97
HDAC3O15379 KRT8P33-201ENST00000508125 1423 ntBASIC21.13■□□□□ 0.97
HDAC3O15379 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.13■□□□□ 0.97
HDAC3O15379 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.13■□□□□ 0.97
HDAC3O15379 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HDAC3O15379 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.13■□□□□ 0.97
HDAC3O15379 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HDAC3O15379 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
HDAC3O15379 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.13■□□□□ 0.97
HDAC3O15379 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.13■□□□□ 0.97
HDAC3O15379 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.13■□□□□ 0.97
HDAC3O15379 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.13■□□□□ 0.97
HDAC3O15379 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HDAC3O15379 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
HDAC3O15379 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HDAC3O15379 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HDAC3O15379 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
HDAC3O15379 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
HDAC3O15379 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HDAC3O15379 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
HDAC3O15379 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HDAC3O15379 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.12■□□□□ 0.97
HDAC3O15379 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.12■□□□□ 0.97
HDAC3O15379 AC009102.2-201ENST00000606772 1639 ntBASIC21.12■□□□□ 0.97
HDAC3O15379 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HDAC3O15379 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.12■□□□□ 0.97
HDAC3O15379 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HDAC3O15379 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.12■□□□□ 0.97
HDAC3O15379 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
HDAC3O15379 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HDAC3O15379 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HDAC3O15379 Z98882.1-201ENST00000622160 2253 ntBASIC21.11■□□□□ 0.97
HDAC3O15379 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HDAC3O15379 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HDAC3O15379 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HDAC3O15379 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.11■□□□□ 0.97
HDAC3O15379 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.11■□□□□ 0.97
HDAC3O15379 AL031848.2-201ENST00000607670 837 ntBASIC21.11■□□□□ 0.97
HDAC3O15379 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HDAC3O15379 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.11■□□□□ 0.97
HDAC3O15379 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.11■□□□□ 0.97
HDAC3O15379 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.11■□□□□ 0.97
HDAC3O15379 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
HDAC3O15379 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HDAC3O15379 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.1■□□□□ 0.97
HDAC3O15379 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HDAC3O15379 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HDAC3O15379 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HDAC3O15379 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HDAC3O15379 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HDAC3O15379 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HDAC3O15379 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.1■□□□□ 0.97
HDAC3O15379 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.1■□□□□ 0.97
HDAC3O15379 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HDAC3O15379 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.09■□□□□ 0.97
HDAC3O15379 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.09■□□□□ 0.97
HDAC3O15379 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HDAC3O15379 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HDAC3O15379 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HDAC3O15379 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.09■□□□□ 0.97
HDAC3O15379 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.09■□□□□ 0.97
HDAC3O15379 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 222.1 ms