Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
PCDHA3Q9Y5H8 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 AL117332.1-201ENST00000622628 974 ntBASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
PCDHA3Q9Y5H8 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
PCDHA3Q9Y5H8 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC22.83■■□□□ 1.24
PCDHA3Q9Y5H8 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
PCDHA3Q9Y5H8 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC22.81■■□□□ 1.24
PCDHA3Q9Y5H8 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC22.8■■□□□ 1.24
PCDHA3Q9Y5H8 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
PCDHA3Q9Y5H8 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC22.79■■□□□ 1.24
PCDHA3Q9Y5H8 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.79■■□□□ 1.24
PCDHA3Q9Y5H8 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.79■■□□□ 1.24
PCDHA3Q9Y5H8 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PCDHA3Q9Y5H8 AC241377.3-202ENST00000626088 1088 ntBASIC22.79■■□□□ 1.24
PCDHA3Q9Y5H8 AC241585.3-202ENST00000628937 1088 ntBASIC22.79■■□□□ 1.24
PCDHA3Q9Y5H8 AC245100.8-202ENST00000629247 1058 ntBASIC22.79■■□□□ 1.24
PCDHA3Q9Y5H8 FAM99A-202ENST00000538190 1989 ntBASIC22.79■■□□□ 1.24
PCDHA3Q9Y5H8 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PCDHA3Q9Y5H8 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
PCDHA3Q9Y5H8 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
PCDHA3Q9Y5H8 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22.78■■□□□ 1.24
PCDHA3Q9Y5H8 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.78■■□□□ 1.24
PCDHA3Q9Y5H8 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
PCDHA3Q9Y5H8 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC22.78■■□□□ 1.24
PCDHA3Q9Y5H8 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
PCDHA3Q9Y5H8 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC22.78■■□□□ 1.24
PCDHA3Q9Y5H8 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PCDHA3Q9Y5H8 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 AC026310.3-201ENST00000625186 2373 ntBASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 OR2A1-AS1-204ENST00000470435 602 ntBASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC22.76■■□□□ 1.23
PCDHA3Q9Y5H8 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms