Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC25.18■■□□□ 1.62
PTPN22Q9Y2R2 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 AC079140.4-201ENST00000507448 529 ntBASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PTPN22Q9Y2R2 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PTPN22Q9Y2R2 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PTPN22Q9Y2R2 PRORSD1P-201ENST00000295112 541 ntBASIC25.16■■□□□ 1.62
PTPN22Q9Y2R2 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PTPN22Q9Y2R2 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PTPN22Q9Y2R2 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PTPN22Q9Y2R2 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC25.16■■□□□ 1.62
PTPN22Q9Y2R2 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC25.16■■□□□ 1.62
PTPN22Q9Y2R2 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PTPN22Q9Y2R2 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PTPN22Q9Y2R2 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
PTPN22Q9Y2R2 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTPN22Q9Y2R2 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTPN22Q9Y2R2 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTPN22Q9Y2R2 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTPN22Q9Y2R2 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC25.15■■□□□ 1.62
PTPN22Q9Y2R2 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
PTPN22Q9Y2R2 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC25.15■■□□□ 1.62
PTPN22Q9Y2R2 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
PTPN22Q9Y2R2 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PTPN22Q9Y2R2 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PTPN22Q9Y2R2 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PTPN22Q9Y2R2 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC25.14■■□□□ 1.62
PTPN22Q9Y2R2 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC25.14■■□□□ 1.62
PTPN22Q9Y2R2 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC25.14■■□□□ 1.61
PTPN22Q9Y2R2 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
PTPN22Q9Y2R2 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC25.14■■□□□ 1.61
PTPN22Q9Y2R2 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
PTPN22Q9Y2R2 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC25.13■■□□□ 1.61
PTPN22Q9Y2R2 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PTPN22Q9Y2R2 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC25.13■■□□□ 1.61
PTPN22Q9Y2R2 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC25.13■■□□□ 1.61
PTPN22Q9Y2R2 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC25.13■■□□□ 1.61
PTPN22Q9Y2R2 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC25.13■■□□□ 1.61
PTPN22Q9Y2R2 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PTPN22Q9Y2R2 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PTPN22Q9Y2R2 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC25.12■■□□□ 1.61
PTPN22Q9Y2R2 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PTPN22Q9Y2R2 RPS2P52-201ENST00000469610 820 ntBASIC25.12■■□□□ 1.61
PTPN22Q9Y2R2 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC25.12■■□□□ 1.61
PTPN22Q9Y2R2 AC098934.4-201ENST00000564127 592 ntBASIC25.12■■□□□ 1.61
PTPN22Q9Y2R2 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC25.12■■□□□ 1.61
PTPN22Q9Y2R2 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
PTPN22Q9Y2R2 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PTPN22Q9Y2R2 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC25.12■■□□□ 1.61
PTPN22Q9Y2R2 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 HLA-L-211ENST00000482052 1765 ntBASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 SMUG1P1-201ENST00000590640 811 ntBASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PTPN22Q9Y2R2 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
PTPN22Q9Y2R2 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PTPN22Q9Y2R2 AF201337.1-201ENST00000520239 748 ntBASIC25.1■■□□□ 1.61
PTPN22Q9Y2R2 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC25.1■■□□□ 1.61
PTPN22Q9Y2R2 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC25.1■■□□□ 1.61
PTPN22Q9Y2R2 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC25.1■■□□□ 1.61
PTPN22Q9Y2R2 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PTPN22Q9Y2R2 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PTPN22Q9Y2R2 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PTPN22Q9Y2R2 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PTPN22Q9Y2R2 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PTPN22Q9Y2R2 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PTPN22Q9Y2R2 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC25.09■■□□□ 1.61
PTPN22Q9Y2R2 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC25.09■■□□□ 1.61
PTPN22Q9Y2R2 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PTPN22Q9Y2R2 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PTPN22Q9Y2R2 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PTPN22Q9Y2R2 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PTPN22Q9Y2R2 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
PTPN22Q9Y2R2 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
PTPN22Q9Y2R2 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTPN22Q9Y2R2 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTPN22Q9Y2R2 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC25.08■■□□□ 1.61
PTPN22Q9Y2R2 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC25.08■■□□□ 1.61
PTPN22Q9Y2R2 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
PTPN22Q9Y2R2 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC25.08■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms