Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC233723.2-201ENST00000623798 2106 ntBASIC20.73■□□□□ 0.91
SCN3AQ9NY46 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SCN3AQ9NY46 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SCN3AQ9NY46 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.73■□□□□ 0.91
SCN3AQ9NY46 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SCN3AQ9NY46 MIR572-201ENST00000384983 95 ntBASIC20.73■□□□□ 0.91
SCN3AQ9NY46 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN3AQ9NY46 IGHV3-19-201ENST00000521488 291 ntBASIC20.73■□□□□ 0.91
SCN3AQ9NY46 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.73■□□□□ 0.91
SCN3AQ9NY46 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.73■□□□□ 0.91
SCN3AQ9NY46 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
SCN3AQ9NY46 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN3AQ9NY46 AC012414.1-201ENST00000556676 535 ntBASIC20.71■□□□□ 0.91
SCN3AQ9NY46 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SCN3AQ9NY46 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
SCN3AQ9NY46 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.69■□□□□ 0.9
SCN3AQ9NY46 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN3AQ9NY46 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN3AQ9NY46 IRS3P-201ENST00000223076 1006 ntBASIC20.69■□□□□ 0.9
SCN3AQ9NY46 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN3AQ9NY46 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN3AQ9NY46 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.69■□□□□ 0.9
SCN3AQ9NY46 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN3AQ9NY46 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN3AQ9NY46 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 AC068587.7-201ENST00000641602 218 ntBASIC20.68■□□□□ 0.9
SCN3AQ9NY46 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SCN3AQ9NY46 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SCN3AQ9NY46 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCN3AQ9NY46 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.67■□□□□ 0.9
SCN3AQ9NY46 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.67■□□□□ 0.9
SCN3AQ9NY46 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SCN3AQ9NY46 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SCN3AQ9NY46 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.67■□□□□ 0.9
SCN3AQ9NY46 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SCN3AQ9NY46 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.65■□□□□ 0.9
SCN3AQ9NY46 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms