Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
HIPK3Q9H422 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
HIPK3Q9H422 TSPY6P-201ENST00000448518 926 ntBASIC24.07■■□□□ 1.44
HIPK3Q9H422 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC24.07■■□□□ 1.44
HIPK3Q9H422 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC24.07■■□□□ 1.44
HIPK3Q9H422 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
HIPK3Q9H422 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
HIPK3Q9H422 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC24.07■■□□□ 1.44
HIPK3Q9H422 AC079630.1-202ENST00000618127 1840 ntBASIC24.07■■□□□ 1.44
HIPK3Q9H422 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
HIPK3Q9H422 ASL-203ENST00000380839 1765 ntTSL 5 BASIC24.06■■□□□ 1.44
HIPK3Q9H422 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
HIPK3Q9H422 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
HIPK3Q9H422 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC24.06■■□□□ 1.44
HIPK3Q9H422 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC24.06■■□□□ 1.44
HIPK3Q9H422 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC24.06■■□□□ 1.44
HIPK3Q9H422 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
HIPK3Q9H422 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.05■■□□□ 1.44
HIPK3Q9H422 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
HIPK3Q9H422 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
HIPK3Q9H422 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
HIPK3Q9H422 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC24.05■■□□□ 1.44
HIPK3Q9H422 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC24.05■■□□□ 1.44
HIPK3Q9H422 KRT18P6-201ENST00000555540 1265 ntBASIC24.05■■□□□ 1.44
HIPK3Q9H422 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC24.05■■□□□ 1.44
HIPK3Q9H422 AC104187.1-201ENST00000607510 612 ntBASIC24.05■■□□□ 1.44
HIPK3Q9H422 AC231657.2-201ENST00000624556 255 ntBASIC24.05■■□□□ 1.44
HIPK3Q9H422 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
HIPK3Q9H422 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC24.05■■□□□ 1.44
HIPK3Q9H422 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
HIPK3Q9H422 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC24.05■■□□□ 1.44
HIPK3Q9H422 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
HIPK3Q9H422 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC24.04■■□□□ 1.44
HIPK3Q9H422 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC24.04■■□□□ 1.44
HIPK3Q9H422 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
HIPK3Q9H422 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.04■■□□□ 1.44
HIPK3Q9H422 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
HIPK3Q9H422 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC24.04■■□□□ 1.44
HIPK3Q9H422 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
HIPK3Q9H422 AC138932.3-201ENST00000567634 1902 ntBASIC24.04■■□□□ 1.44
HIPK3Q9H422 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.03■■□□□ 1.44
HIPK3Q9H422 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
HIPK3Q9H422 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC24.03■■□□□ 1.44
HIPK3Q9H422 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC24.03■■□□□ 1.44
HIPK3Q9H422 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC24.03■■□□□ 1.44
HIPK3Q9H422 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
HIPK3Q9H422 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HIPK3Q9H422 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HIPK3Q9H422 KRT87P-202ENST00000534226 1464 ntBASIC24.02■■□□□ 1.44
HIPK3Q9H422 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC24.02■■□□□ 1.44
HIPK3Q9H422 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC24.02■■□□□ 1.44
HIPK3Q9H422 AC007322.1-201ENST00000426983 750 ntBASIC24.02■■□□□ 1.44
HIPK3Q9H422 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC24.02■■□□□ 1.44
HIPK3Q9H422 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC24.02■■□□□ 1.44
HIPK3Q9H422 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
HIPK3Q9H422 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC24.02■■□□□ 1.44
HIPK3Q9H422 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC24.02■■□□□ 1.44
HIPK3Q9H422 AC005181.1-201ENST00000604782 1256 ntBASIC24.02■■□□□ 1.44
HIPK3Q9H422 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC24.02■■□□□ 1.44
HIPK3Q9H422 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
HIPK3Q9H422 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HIPK3Q9H422 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC24.01■■□□□ 1.43
HIPK3Q9H422 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.01■■□□□ 1.43
HIPK3Q9H422 GUSBP6-202ENST00000438529 1198 ntBASIC24.01■■□□□ 1.43
HIPK3Q9H422 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC24.01■■□□□ 1.43
HIPK3Q9H422 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HIPK3Q9H422 SLC7A5P2-201ENST00000553010 536 ntBASIC24.01■■□□□ 1.43
HIPK3Q9H422 DUX4L16-201ENST00000555130 1264 ntBASIC24.01■■□□□ 1.43
HIPK3Q9H422 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HIPK3Q9H422 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC24.01■■□□□ 1.43
HIPK3Q9H422 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HIPK3Q9H422 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC24.01■■□□□ 1.43
HIPK3Q9H422 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HIPK3Q9H422 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
HIPK3Q9H422 AC142381.3-201ENST00000568208 1670 ntBASIC24■■□□□ 1.43
HIPK3Q9H422 PARP1-202ENST00000366792 553 ntTSL 3 BASIC24■■□□□ 1.43
HIPK3Q9H422 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC24■■□□□ 1.43
HIPK3Q9H422 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC24■■□□□ 1.43
HIPK3Q9H422 KLF13-207ENST00000560473 489 ntTSL 3 BASIC24■■□□□ 1.43
HIPK3Q9H422 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC24■■□□□ 1.43
HIPK3Q9H422 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
HIPK3Q9H422 TFG-210ENST00000620299 1289 ntTSL 5 BASIC24■■□□□ 1.43
HIPK3Q9H422 PARP1-210ENST00000629232 477 ntTSL 5 BASIC24■■□□□ 1.43
HIPK3Q9H422 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24■■□□□ 1.43
HIPK3Q9H422 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC24■■□□□ 1.43
HIPK3Q9H422 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24■■□□□ 1.43
HIPK3Q9H422 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC24■■□□□ 1.43
HIPK3Q9H422 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
HIPK3Q9H422 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.99■■□□□ 1.43
HIPK3Q9H422 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.99■■□□□ 1.43
HIPK3Q9H422 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
HIPK3Q9H422 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HIPK3Q9H422 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.99■■□□□ 1.43
HIPK3Q9H422 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.99■■□□□ 1.43
HIPK3Q9H422 AL138781.1-201ENST00000566567 1274 ntBASIC23.99■■□□□ 1.43
HIPK3Q9H422 UBE2DNL-204ENST00000602536 740 ntBASIC23.99■■□□□ 1.43
HIPK3Q9H422 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC23.99■■□□□ 1.43
HIPK3Q9H422 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.99■■□□□ 1.43
HIPK3Q9H422 AL353803.4-201ENST00000565882 1934 ntBASIC23.99■■□□□ 1.43
HIPK3Q9H422 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms