Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
POLR2J3Q9H1A7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
POLR2J3Q9H1A7 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.13■□□□□ 0.81
POLR2J3Q9H1A7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
POLR2J3Q9H1A7 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
POLR2J3Q9H1A7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.12■□□□□ 0.81
POLR2J3Q9H1A7 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.12■□□□□ 0.81
POLR2J3Q9H1A7 AC239859.2-201ENST00000444165 318 ntBASIC20.12■□□□□ 0.81
POLR2J3Q9H1A7 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.12■□□□□ 0.81
POLR2J3Q9H1A7 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
POLR2J3Q9H1A7 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
POLR2J3Q9H1A7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.12■□□□□ 0.81
POLR2J3Q9H1A7 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
POLR2J3Q9H1A7 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
POLR2J3Q9H1A7 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
POLR2J3Q9H1A7 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 CA15P2-201ENST00000611168 834 ntBASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
POLR2J3Q9H1A7 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 RARRES2P1-201ENST00000474487 481 ntBASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 AL499627.2-201ENST00000606283 725 ntBASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
POLR2J3Q9H1A7 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
POLR2J3Q9H1A7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.08■□□□□ 0.81
POLR2J3Q9H1A7 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
POLR2J3Q9H1A7 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
POLR2J3Q9H1A7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.08■□□□□ 0.81
POLR2J3Q9H1A7 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
POLR2J3Q9H1A7 AC009299.2-201ENST00000482477 511 ntBASIC20.08■□□□□ 0.81
POLR2J3Q9H1A7 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
POLR2J3Q9H1A7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
POLR2J3Q9H1A7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
POLR2J3Q9H1A7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.08■□□□□ 0.8
POLR2J3Q9H1A7 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.08■□□□□ 0.8
POLR2J3Q9H1A7 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
POLR2J3Q9H1A7 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 AC004687.1-201ENST00000579003 1625 ntBASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 MIR6724-1-201ENST00000616420 92 ntBASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 MIR6724-2-201ENST00000616483 92 ntBASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 MIR6724-4-201ENST00000617390 92 ntBASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 MIR6724-3-201ENST00000622482 92 ntBASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
POLR2J3Q9H1A7 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.06■□□□□ 0.8
POLR2J3Q9H1A7 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms