Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC28BQ9BUN5 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 CA15P2-201ENST00000611168 834 ntBASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC28BQ9BUN5 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC28BQ9BUN5 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC28BQ9BUN5 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC28BQ9BUN5 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC28BQ9BUN5 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC28BQ9BUN5 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC28BQ9BUN5 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC28BQ9BUN5 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC28BQ9BUN5 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC28BQ9BUN5 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC28BQ9BUN5 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC28BQ9BUN5 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC28BQ9BUN5 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC28BQ9BUN5 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC28BQ9BUN5 NTF6A-201ENST00000591175 560 ntBASIC21.16■□□□□ 0.98
CCDC28BQ9BUN5 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC28BQ9BUN5 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC28BQ9BUN5 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 AC005703.6-201ENST00000623265 1329 ntBASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 AC010980.1-201ENST00000587192 1142 ntBASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC28BQ9BUN5 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
CCDC28BQ9BUN5 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
CCDC28BQ9BUN5 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC28BQ9BUN5 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC28BQ9BUN5 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC28BQ9BUN5 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC28BQ9BUN5 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.14■□□□□ 0.98
CCDC28BQ9BUN5 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 MIR4508-201ENST00000584178 70 ntBASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 AC005229.4-201ENST00000610085 2198 ntBASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC28BQ9BUN5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC28BQ9BUN5 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC28BQ9BUN5 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC28BQ9BUN5 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC28BQ9BUN5 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC28BQ9BUN5 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC28BQ9BUN5 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CCDC28BQ9BUN5 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC28BQ9BUN5 AC004987.1-201ENST00000428627 508 ntBASIC21.13■□□□□ 0.97
CCDC28BQ9BUN5 ATP5G2P3-201ENST00000429083 425 ntBASIC21.13■□□□□ 0.97
CCDC28BQ9BUN5 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms