Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 AC098934.4-201ENST00000564127 592 ntBASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CSPG4Q6UVK1 AC138932.3-201ENST00000567634 1902 ntBASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CSPG4Q6UVK1 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 FAM201B-201ENST00000458407 597 ntBASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 AC020928.2-201ENST00000588717 2197 ntBASIC18.09■□□□□ 0.49
CSPG4Q6UVK1 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CSPG4Q6UVK1 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CSPG4Q6UVK1 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CSPG4Q6UVK1 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CSPG4Q6UVK1 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CSPG4Q6UVK1 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CSPG4Q6UVK1 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CSPG4Q6UVK1 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CSPG4Q6UVK1 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CSPG4Q6UVK1 AC007322.1-201ENST00000426983 750 ntBASIC18.08■□□□□ 0.48
CSPG4Q6UVK1 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.08■□□□□ 0.48
CSPG4Q6UVK1 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.08■□□□□ 0.48
CSPG4Q6UVK1 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CSPG4Q6UVK1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.08■□□□□ 0.48
CSPG4Q6UVK1 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
CSPG4Q6UVK1 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CSPG4Q6UVK1 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.08■□□□□ 0.48
CSPG4Q6UVK1 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.08■□□□□ 0.48
CSPG4Q6UVK1 POU5F1P3-201ENST00000428824 1078 ntBASIC18.07■□□□□ 0.48
CSPG4Q6UVK1 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CSPG4Q6UVK1 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CSPG4Q6UVK1 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CSPG4Q6UVK1 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.07■□□□□ 0.48
CSPG4Q6UVK1 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CSPG4Q6UVK1 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CSPG4Q6UVK1 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CSPG4Q6UVK1 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 AC005181.1-201ENST00000604782 1256 ntBASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 AP003733.4-201ENST00000623785 1697 ntBASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.06■□□□□ 0.48
CSPG4Q6UVK1 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CSPG4Q6UVK1 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms