Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PPP4R4Q6NUP7 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 AC021242.3-201ENST00000607598 1377 ntBASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PPP4R4Q6NUP7 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 AL022069.1-201ENST00000568025 1636 ntBASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 AC073130.3-201ENST00000624389 2278 ntBASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 KRT16P3-201ENST00000439127 1283 ntBASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 AC131212.1-201ENST00000613771 668 ntBASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 AF131216.4-201ENST00000638924 1588 ntBASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
PPP4R4Q6NUP7 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 ALDH1A3-203ENST00000557963 1670 ntBASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 MTDHP2-201ENST00000601468 714 ntBASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PPP4R4Q6NUP7 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
PPP4R4Q6NUP7 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PPP4R4Q6NUP7 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PPP4R4Q6NUP7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
PPP4R4Q6NUP7 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PPP4R4Q6NUP7 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.77■□□□□ 0.92
PPP4R4Q6NUP7 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.77■□□□□ 0.92
PPP4R4Q6NUP7 AC092028.1-203ENST00000608262 953 ntBASIC20.77■□□□□ 0.92
PPP4R4Q6NUP7 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PPP4R4Q6NUP7 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
PPP4R4Q6NUP7 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PPP4R4Q6NUP7 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.77■□□□□ 0.91
PPP4R4Q6NUP7 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.77■□□□□ 0.91
PPP4R4Q6NUP7 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
PPP4R4Q6NUP7 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
PPP4R4Q6NUP7 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PPP4R4Q6NUP7 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PPP4R4Q6NUP7 AL356441.2-201ENST00000443009 864 ntBASIC20.76■□□□□ 0.91
PPP4R4Q6NUP7 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.76■□□□□ 0.91
PPP4R4Q6NUP7 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
PPP4R4Q6NUP7 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PPP4R4Q6NUP7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
PPP4R4Q6NUP7 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 UNC93B8-201ENST00000511903 705 ntBASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PPP4R4Q6NUP7 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PPP4R4Q6NUP7 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PPP4R4Q6NUP7 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PPP4R4Q6NUP7 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PPP4R4Q6NUP7 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
PPP4R4Q6NUP7 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.74■□□□□ 0.91
PPP4R4Q6NUP7 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
PPP4R4Q6NUP7 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PPP4R4Q6NUP7 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
PPP4R4Q6NUP7 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PPP4R4Q6NUP7 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PPP4R4Q6NUP7 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms