Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGCS1Q01581 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HMGCS1Q01581 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
HMGCS1Q01581 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HMGCS1Q01581 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
HMGCS1Q01581 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
HMGCS1Q01581 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGCS1Q01581 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGCS1Q01581 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGCS1Q01581 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGCS1Q01581 FBXW4P1-201ENST00000426721 2239 ntBASIC21.01■□□□□ 0.95
HMGCS1Q01581 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGCS1Q01581 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
HMGCS1Q01581 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGCS1Q01581 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGCS1Q01581 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGCS1Q01581 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGCS1Q01581 AL356740.2-201ENST00000601559 647 ntBASIC21.01■□□□□ 0.95
HMGCS1Q01581 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGCS1Q01581 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
HMGCS1Q01581 AC007375.3-201ENST00000600936 2314 ntBASIC21.01■□□□□ 0.95
HMGCS1Q01581 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.01■□□□□ 0.95
HMGCS1Q01581 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HMGCS1Q01581 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
HMGCS1Q01581 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.01■□□□□ 0.95
HMGCS1Q01581 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGCS1Q01581 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21■□□□□ 0.95
HMGCS1Q01581 AL356441.2-201ENST00000443009 864 ntBASIC21■□□□□ 0.95
HMGCS1Q01581 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
HMGCS1Q01581 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21■□□□□ 0.95
HMGCS1Q01581 AC241377.3-202ENST00000626088 1088 ntBASIC21■□□□□ 0.95
HMGCS1Q01581 AC241585.3-202ENST00000628937 1088 ntBASIC21■□□□□ 0.95
HMGCS1Q01581 AC245100.8-202ENST00000629247 1058 ntBASIC21■□□□□ 0.95
HMGCS1Q01581 RASSF1-AS1-201ENST00000629828 790 ntBASIC21■□□□□ 0.95
HMGCS1Q01581 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HMGCS1Q01581 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21■□□□□ 0.95
HMGCS1Q01581 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
HMGCS1Q01581 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCS1Q01581 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGCS1Q01581 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.99■□□□□ 0.95
HMGCS1Q01581 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGCS1Q01581 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCS1Q01581 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCS1Q01581 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.99■□□□□ 0.95
HMGCS1Q01581 AC099791.2-201ENST00000605725 427 ntBASIC20.99■□□□□ 0.95
HMGCS1Q01581 CA15P2-201ENST00000611168 834 ntBASIC20.99■□□□□ 0.95
HMGCS1Q01581 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCS1Q01581 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
HMGCS1Q01581 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCS1Q01581 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCS1Q01581 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.99■□□□□ 0.95
HMGCS1Q01581 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HMGCS1Q01581 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGCS1Q01581 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGCS1Q01581 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.98■□□□□ 0.95
HMGCS1Q01581 MIR3621-201ENST00000580529 85 ntBASIC20.98■□□□□ 0.95
HMGCS1Q01581 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.98■□□□□ 0.95
HMGCS1Q01581 pRNA.6-201ENST00000610482 90 ntBASIC20.98■□□□□ 0.95
HMGCS1Q01581 pRNA.5-201ENST00000612139 90 ntBASIC20.98■□□□□ 0.95
HMGCS1Q01581 pRNA.11-201ENST00000618423 90 ntBASIC20.98■□□□□ 0.95
HMGCS1Q01581 pRNA.13-201ENST00000619112 90 ntBASIC20.98■□□□□ 0.95
HMGCS1Q01581 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGCS1Q01581 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HMGCS1Q01581 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCS1Q01581 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.97■□□□□ 0.95
HMGCS1Q01581 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.97■□□□□ 0.95
HMGCS1Q01581 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.97■□□□□ 0.95
HMGCS1Q01581 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCS1Q01581 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCS1Q01581 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
HMGCS1Q01581 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.97■□□□□ 0.95
HMGCS1Q01581 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCS1Q01581 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGCS1Q01581 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
HMGCS1Q01581 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGCS1Q01581 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
HMGCS1Q01581 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGCS1Q01581 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
HMGCS1Q01581 AC133637.1-201ENST00000624115 1537 ntBASIC20.96■□□□□ 0.95
HMGCS1Q01581 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGCS1Q01581 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGCS1Q01581 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGCS1Q01581 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGCS1Q01581 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGCS1Q01581 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGCS1Q01581 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGCS1Q01581 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGCS1Q01581 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCS1Q01581 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGCS1Q01581 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCS1Q01581 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
HMGCS1Q01581 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.95■□□□□ 0.94
HMGCS1Q01581 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.95■□□□□ 0.94
HMGCS1Q01581 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGCS1Q01581 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGCS1Q01581 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGCS1Q01581 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGCS1Q01581 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGCS1Q01581 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGCS1Q01581 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms