Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CDH12P55289 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH12P55289 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH12P55289 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH12P55289 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CDH12P55289 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CDH12P55289 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH12P55289 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
CDH12P55289 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH12P55289 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH12P55289 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH12P55289 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CDH12P55289 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH12P55289 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH12P55289 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH12P55289 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.27■□□□□ 0.84
CDH12P55289 TSPY9P-201ENST00000440215 945 ntBASIC20.27■□□□□ 0.84
CDH12P55289 TSPY11P-201ENST00000442607 1045 ntBASIC20.27■□□□□ 0.84
CDH12P55289 AC010997.5-201ENST00000609182 354 ntBASIC20.27■□□□□ 0.84
CDH12P55289 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH12P55289 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CDH12P55289 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.27■□□□□ 0.83
CDH12P55289 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH12P55289 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
CDH12P55289 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH12P55289 LINC01960-201ENST00000563759 1884 ntBASIC20.26■□□□□ 0.83
CDH12P55289 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH12P55289 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH12P55289 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH12P55289 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH12P55289 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH12P55289 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH12P55289 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH12P55289 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.26■□□□□ 0.83
CDH12P55289 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDH12P55289 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.26■□□□□ 0.83
CDH12P55289 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH12P55289 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH12P55289 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CDH12P55289 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDH12P55289 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH12P55289 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.25■□□□□ 0.83
CDH12P55289 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH12P55289 AC009102.2-201ENST00000606772 1639 ntBASIC20.25■□□□□ 0.83
CDH12P55289 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH12P55289 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDH12P55289 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.25■□□□□ 0.83
CDH12P55289 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.25■□□□□ 0.83
CDH12P55289 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH12P55289 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH12P55289 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH12P55289 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH12P55289 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH12P55289 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH12P55289 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH12P55289 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDH12P55289 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.24■□□□□ 0.83
CDH12P55289 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH12P55289 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH12P55289 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH12P55289 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH12P55289 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.24■□□□□ 0.83
CDH12P55289 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH12P55289 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH12P55289 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDH12P55289 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH12P55289 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CDH12P55289 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.23■□□□□ 0.83
CDH12P55289 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH12P55289 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDH12P55289 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH12P55289 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH12P55289 FAM99A-202ENST00000538190 1989 ntBASIC20.23■□□□□ 0.83
CDH12P55289 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH12P55289 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.23■□□□□ 0.83
CDH12P55289 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH12P55289 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CDH12P55289 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH12P55289 AC026310.3-201ENST00000625186 2373 ntBASIC20.23■□□□□ 0.83
CDH12P55289 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH12P55289 AC010542.4-201ENST00000563151 1910 ntBASIC20.23■□□□□ 0.83
CDH12P55289 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDH12P55289 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDH12P55289 AL024507.2-201ENST00000606070 2574 ntBASIC20.23■□□□□ 0.83
CDH12P55289 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDH12P55289 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
CDH12P55289 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDH12P55289 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.22■□□□□ 0.83
CDH12P55289 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CDH12P55289 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.22■□□□□ 0.83
CDH12P55289 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CDH12P55289 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.22■□□□□ 0.83
CDH12P55289 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDH12P55289 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CDH12P55289 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
CDH12P55289 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CDH12P55289 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CDH12P55289 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.22■□□□□ 0.83
CDH12P55289 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDH12P55289 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms