Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.99■■□□□ 1.11
CXCL12P48061 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CXCL12P48061 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CXCL12P48061 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.99■■□□□ 1.11
CXCL12P48061 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CXCL12P48061 FAM201B-201ENST00000458407 597 ntBASIC21.99■■□□□ 1.11
CXCL12P48061 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.99■■□□□ 1.11
CXCL12P48061 AL138781.1-201ENST00000566567 1274 ntBASIC21.99■■□□□ 1.11
CXCL12P48061 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CXCL12P48061 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CXCL12P48061 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CXCL12P48061 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CXCL12P48061 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CXCL12P48061 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CXCL12P48061 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
CXCL12P48061 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
CXCL12P48061 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.98■■□□□ 1.11
CXCL12P48061 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.98■■□□□ 1.11
CXCL12P48061 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.98■■□□□ 1.11
CXCL12P48061 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.98■■□□□ 1.11
CXCL12P48061 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
CXCL12P48061 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CXCL12P48061 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.98■■□□□ 1.11
CXCL12P48061 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CXCL12P48061 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CXCL12P48061 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.97■■□□□ 1.11
CXCL12P48061 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CXCL12P48061 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CXCL12P48061 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CXCL12P48061 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.97■■□□□ 1.11
CXCL12P48061 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
CXCL12P48061 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CXCL12P48061 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CXCL12P48061 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CXCL12P48061 AC005224.4-201ENST00000583262 1652 ntBASIC21.97■■□□□ 1.11
CXCL12P48061 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CXCL12P48061 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CXCL12P48061 AC079630.1-202ENST00000618127 1840 ntBASIC21.96■■□□□ 1.11
CXCL12P48061 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.96■■□□□ 1.11
CXCL12P48061 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.96■■□□□ 1.11
CXCL12P48061 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
CXCL12P48061 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.96■■□□□ 1.11
CXCL12P48061 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
CXCL12P48061 UBE2DNL-204ENST00000602536 740 ntBASIC21.96■■□□□ 1.11
CXCL12P48061 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.96■■□□□ 1.11
CXCL12P48061 AC009237.3-201ENST00000393279 1427 ntBASIC21.96■■□□□ 1.11
CXCL12P48061 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CXCL12P48061 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CXCL12P48061 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CXCL12P48061 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.96■■□□□ 1.11
CXCL12P48061 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.96■■□□□ 1.11
CXCL12P48061 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CXCL12P48061 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CXCL12P48061 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.95■■□□□ 1.1
CXCL12P48061 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
CXCL12P48061 MIR4651-201ENST00000582622 73 ntBASIC21.95■■□□□ 1.1
CXCL12P48061 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.95■■□□□ 1.1
CXCL12P48061 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CXCL12P48061 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CXCL12P48061 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.95■■□□□ 1.1
CXCL12P48061 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CXCL12P48061 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CXCL12P48061 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CXCL12P48061 AC069152.1-201ENST00000438030 544 ntBASIC21.94■■□□□ 1.1
CXCL12P48061 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CXCL12P48061 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CXCL12P48061 AC133041.1-202ENST00000642053 222 ntBASIC21.94■■□□□ 1.1
CXCL12P48061 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CXCL12P48061 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CXCL12P48061 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CXCL12P48061 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CXCL12P48061 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CXCL12P48061 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CXCL12P48061 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CXCL12P48061 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CXCL12P48061 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CXCL12P48061 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CXCL12P48061 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CXCL12P48061 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CXCL12P48061 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.93■■□□□ 1.1
CXCL12P48061 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CXCL12P48061 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CXCL12P48061 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.93■■□□□ 1.1
CXCL12P48061 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CXCL12P48061 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.92■■□□□ 1.1
CXCL12P48061 AF201337.1-201ENST00000520239 748 ntBASIC21.92■■□□□ 1.1
CXCL12P48061 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CXCL12P48061 MYCNOS-205ENST00000641950 531 ntBASIC21.92■■□□□ 1.1
CXCL12P48061 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.91■■□□□ 1.1
CXCL12P48061 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CXCL12P48061 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CXCL12P48061 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.91■■□□□ 1.1
CXCL12P48061 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.91■■□□□ 1.1
CXCL12P48061 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.91■■□□□ 1.1
CXCL12P48061 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.91■■□□□ 1.1
CXCL12P48061 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.91■■□□□ 1.1
CXCL12P48061 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
CXCL12P48061 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CXCL12P48061 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CXCL12P48061 AL353803.4-201ENST00000565882 1934 ntBASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms