Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
XRCC1P18887 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
XRCC1P18887 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
XRCC1P18887 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
XRCC1P18887 BX842568.3-201ENST00000418104 571 ntBASIC21.72■■□□□ 1.07
XRCC1P18887 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
XRCC1P18887 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
XRCC1P18887 AC008764.7-201ENST00000593779 1081 ntBASIC21.72■■□□□ 1.07
XRCC1P18887 AC233992.3-201ENST00000607491 485 ntBASIC21.72■■□□□ 1.07
XRCC1P18887 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
XRCC1P18887 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
XRCC1P18887 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
XRCC1P18887 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
XRCC1P18887 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
XRCC1P18887 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
XRCC1P18887 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.72■■□□□ 1.07
XRCC1P18887 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
XRCC1P18887 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
XRCC1P18887 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.71■■□□□ 1.07
XRCC1P18887 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
XRCC1P18887 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.71■■□□□ 1.07
XRCC1P18887 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
XRCC1P18887 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
XRCC1P18887 ZNRF2P3-201ENST00000424200 374 ntBASIC21.71■■□□□ 1.07
XRCC1P18887 CA15P2-201ENST00000611168 834 ntBASIC21.71■■□□□ 1.07
XRCC1P18887 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
XRCC1P18887 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
XRCC1P18887 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
XRCC1P18887 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.71■■□□□ 1.07
XRCC1P18887 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
XRCC1P18887 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
XRCC1P18887 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
XRCC1P18887 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
XRCC1P18887 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.71■■□□□ 1.07
XRCC1P18887 AL024507.2-201ENST00000606070 2574 ntBASIC21.71■■□□□ 1.07
XRCC1P18887 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
XRCC1P18887 AC133637.1-201ENST00000624115 1537 ntBASIC21.7■■□□□ 1.07
XRCC1P18887 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
XRCC1P18887 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
XRCC1P18887 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
XRCC1P18887 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
XRCC1P18887 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
XRCC1P18887 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.7■■□□□ 1.06
XRCC1P18887 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
XRCC1P18887 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
XRCC1P18887 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
XRCC1P18887 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
XRCC1P18887 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.7■■□□□ 1.06
XRCC1P18887 MIR935-201ENST00000401179 91 ntBASIC21.7■■□□□ 1.06
XRCC1P18887 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.7■■□□□ 1.06
XRCC1P18887 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
XRCC1P18887 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.7■■□□□ 1.06
XRCC1P18887 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.7■■□□□ 1.06
XRCC1P18887 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
XRCC1P18887 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
XRCC1P18887 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
XRCC1P18887 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
XRCC1P18887 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.69■■□□□ 1.06
XRCC1P18887 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
XRCC1P18887 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.69■■□□□ 1.06
XRCC1P18887 AC099791.1-201ENST00000416440 715 ntBASIC21.69■■□□□ 1.06
XRCC1P18887 AC105265.2-201ENST00000467189 838 ntBASIC21.69■■□□□ 1.06
XRCC1P18887 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.69■■□□□ 1.06
XRCC1P18887 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.69■■□□□ 1.06
XRCC1P18887 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.69■■□□□ 1.06
XRCC1P18887 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
XRCC1P18887 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
XRCC1P18887 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
XRCC1P18887 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.69■■□□□ 1.06
XRCC1P18887 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
XRCC1P18887 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
XRCC1P18887 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
XRCC1P18887 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
XRCC1P18887 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
XRCC1P18887 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.68■■□□□ 1.06
XRCC1P18887 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
XRCC1P18887 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.68■■□□□ 1.06
XRCC1P18887 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
XRCC1P18887 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
XRCC1P18887 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
XRCC1P18887 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
XRCC1P18887 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
XRCC1P18887 AC079630.1-202ENST00000618127 1840 ntBASIC21.67■■□□□ 1.06
XRCC1P18887 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.67■■□□□ 1.06
XRCC1P18887 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.67■■□□□ 1.06
XRCC1P18887 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
XRCC1P18887 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.67■■□□□ 1.06
XRCC1P18887 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
XRCC1P18887 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.67■■□□□ 1.06
XRCC1P18887 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
XRCC1P18887 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
XRCC1P18887 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
XRCC1P18887 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.67■■□□□ 1.06
XRCC1P18887 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
XRCC1P18887 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.66■■□□□ 1.06
XRCC1P18887 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
XRCC1P18887 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.66■■□□□ 1.06
XRCC1P18887 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
XRCC1P18887 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.66■■□□□ 1.06
XRCC1P18887 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms