Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LDB3O75112 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.56■□□□□ 0.88
LDB3O75112 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDB3O75112 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDB3O75112 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
LDB3O75112 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDB3O75112 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
LDB3O75112 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDB3O75112 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDB3O75112 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDB3O75112 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
LDB3O75112 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDB3O75112 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDB3O75112 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDB3O75112 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDB3O75112 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDB3O75112 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDB3O75112 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LDB3O75112 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LDB3O75112 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
LDB3O75112 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDB3O75112 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.54■□□□□ 0.88
LDB3O75112 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
LDB3O75112 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LDB3O75112 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.54■□□□□ 0.88
LDB3O75112 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.54■□□□□ 0.88
LDB3O75112 AC091305.1-201ENST00000479476 895 ntBASIC20.54■□□□□ 0.88
LDB3O75112 RASA4CP-201ENST00000424092 1398 ntBASIC20.54■□□□□ 0.88
LDB3O75112 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDB3O75112 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDB3O75112 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LDB3O75112 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDB3O75112 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
LDB3O75112 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LDB3O75112 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LDB3O75112 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.53■□□□□ 0.88
LDB3O75112 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.53■□□□□ 0.88
LDB3O75112 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.53■□□□□ 0.88
LDB3O75112 CA15P2-201ENST00000611168 834 ntBASIC20.53■□□□□ 0.88
LDB3O75112 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
LDB3O75112 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
LDB3O75112 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.53■□□□□ 0.88
LDB3O75112 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LDB3O75112 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDB3O75112 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.53■□□□□ 0.88
LDB3O75112 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LDB3O75112 ESRRAP2-201ENST00000418437 1549 ntBASIC20.53■□□□□ 0.88
LDB3O75112 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
LDB3O75112 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LDB3O75112 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LDB3O75112 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.52■□□□□ 0.88
LDB3O75112 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LDB3O75112 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.52■□□□□ 0.88
LDB3O75112 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LDB3O75112 AP005435.1-201ENST00000529293 1178 ntBASIC20.52■□□□□ 0.88
LDB3O75112 AC068587.7-201ENST00000641602 218 ntBASIC20.52■□□□□ 0.88
LDB3O75112 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.51■□□□□ 0.87
LDB3O75112 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB3O75112 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB3O75112 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
LDB3O75112 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LDB3O75112 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.51■□□□□ 0.87
LDB3O75112 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.51■□□□□ 0.87
LDB3O75112 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LDB3O75112 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB3O75112 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LDB3O75112 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LDB3O75112 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB3O75112 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LDB3O75112 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB3O75112 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LDB3O75112 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB3O75112 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB3O75112 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.5■□□□□ 0.87
LDB3O75112 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB3O75112 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.5■□□□□ 0.87
LDB3O75112 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.5■□□□□ 0.87
LDB3O75112 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.5■□□□□ 0.87
LDB3O75112 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.5■□□□□ 0.87
LDB3O75112 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LDB3O75112 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LDB3O75112 AC087239.1-201ENST00000622671 572 ntBASIC20.5■□□□□ 0.87
LDB3O75112 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB3O75112 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB3O75112 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
LDB3O75112 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LDB3O75112 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB3O75112 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB3O75112 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB3O75112 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LDB3O75112 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB3O75112 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
LDB3O75112 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB3O75112 AC010141.3-201ENST00000456659 717 ntBASIC20.49■□□□□ 0.87
LDB3O75112 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
LDB3O75112 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB3O75112 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
LDB3O75112 TSPY26P-201ENST00000476365 1326 ntBASIC20.49■□□□□ 0.87
LDB3O75112 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB3O75112 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms